YRC Public Data Repository - Protein Structure Prediction

Protein:	LTV1
Organism:	Saccharomyces cerevisiae
Length:	463 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LTV1.

Description	E-value	Query Range	Subject Range
gi\|151941664 - gi\|151941664\|gb\|EDN60026.1\| conserved protein [Saccharomyces cerevisiae YJM789] LTV1_YEAST - Protein LTV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LTV1 PE=1 SV=2 LTV1 - Component of the GSE complex, which is required for proper sorting of amino acid permease Gap1p; req...	0.0	[1..463]	[1..463]
gi\|85099140 - gi\|85099140\|ref\|XP_960723.1\| hypothetical protein NCU04165 [Neurospora crassa OR74A] gi\|16944646, gi\|... - gi\|32405784\|ref\|XP_323505.1\| hypothetical protein ( (AL513445) related to low-temperature viability ...	0.0	[3..435]	[5..406]
LTV1_SCHPO - Protein LTV1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ltv1 PE=1 SV=1 SPAC3F10.17 - ribosome biogenesis protein Ltv1	3.0E-89	[3..434]	[4..379]
LTV1_PONPY - Protein LTV1 homolog - Pongo pygmaeus (Orangutan) LTV1_PONAB - Protein LTV1 homolog OS=Pongo abelii GN=LTV1 PE=2 SV=1 LTV1 - LTV1 homolog (S. cerevisiae)	2.0E-54	[5..238]	[10..214]
LTV1_MOUSE - Protein LTV1 homolog OS=Mus musculus GN=Ltv1 PE=1 SV=2	2.0E-48	[5..236]	[10..207]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKFSSKNS QRYVVVHRPH DDPSFYDTDA SAHVLVPVSN PNKTSPEADL RKKDVSSTKP  60
   61 KGRRAHVGEA ALYGINFDDS EYDYTQHLKP IGLDPENSIF IASKGNEQKV EKKNIEDLFI 120
  121 EPKYRRDEIE KDDALPVFQR GMAKPEYLLH QQDTTDEIRG FKPDMNPALR EVLEALEDEA 180
  181 YVVNDDVVVE DISKKTQLQG DNYGEEEKED DIFAQLLGSG EAKDEDEFED EFDEWDIDN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [240-463]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VENFEDENYV KEMAQFDNIE NLEDLENIDY QADVRRFQKD NSILEKHNSD DEFSNAGLDS  60
   61 VNPSEEEDVL GELPSIQDKS KTGKKKRKSR QKKGAMSDVS GFSMSSSAIA RTETMTVLDD 120
  121 QYDQIINGYE NYEEELEEDE EQNYQPFDMS AERSDFESML DDFLDNYELE SGGRKLAKKD 180
  181 KEIERLKEAA DEVSKGKLSQ RRNRERQEKK KLEKVTNTLS SLKF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits