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View Structure Prediction Details

Protein: PMU1
Organism: Saccharomyces cerevisiae
Length: 295 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMU1.

Description E-value Query
Range
Subject
Range
gi|190409709 - gi|190409709|gb|EDV12974.1| hypothetical protein SCRG_03896 [Saccharomyces cerevisiae RM11-1a]
PMU1 - Putative phosphomutase, contains a region homologous to the active site of phosphomutases; overexpre...
PMU1_YEAST - Probable phosphoglycerate mutase PMU1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PM...
6.0E-64 [1..295] [1..295]
gi|17427362 - gi|17427362|emb|CAD13881.1| probable 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phos...
gi|17545072 - gi|17545072|ref|NP_518474.1| phosphoglyceromutase [Ralstonia solanacearum GMI1000]
6.0E-49 [55..291] [22..241]
GPMA_ZYMMO - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Zymomonas mobilis GN=gpmA PE=1 SV=1
gi|241373576, gi... - gi|241761896|ref|ZP_04759981.1| phosphoglycerate mutase 1 family [Zymomonas mobilis subsp. mobilis A...
GPMA_ZYMMO - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Zymomonas mobilis subsp. mobilis (strai...
1.0E-48 [53..294] [1..222]
GPMA_SALA4 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella agona (strain SL483) GN=gpmA...
GPMA_SALPB - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA...
GPMA_SALHS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella heidelberg (strain SL476) GN...
GPMA_SALEP - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella enteritidis PT4 (strain P125...
GPMA_SALG2 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella gallinarum (strain 287/91 / ...
gi|167994417, gi... - gi|205327722|gb|EDZ14486.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en...
gi|205324579, gi... - gi|205324579|gb|EDZ12418.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en...
GPMA_SALTY - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmA PE=3 SV=...
gi|168263737, gi... - gi|205347720|gb|EDZ34351.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en...
gi|205340128, gi... - gi|205340128|gb|EDZ26892.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en...
lcl|NC_016856.1_... - [gene=gpmA] [protein=phosphoglyceromutase] [protein_id=YP_005236490.1] [location=complement(836703.....
GPMA_SALTY - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhimurium (strain LT2 / SG...
GPMA_SALTY - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmA PE=3 SV=...
GPMA_SALPB - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA...
1.0E-47 [55..291] [5..224]
gi|214001890 - gi|214001890|ref|ZP_03412625.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
GPMA_SALPC - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi C (strain RKS4594)...
gi|213427699 - gi|213427699|ref|ZP_03360449.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
GPMA_SALCH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmA PE=3 SV...
gi|213582686 - gi|213582686|ref|ZP_03364512.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
gi|213649737 - gi|213649737|ref|ZP_03379790.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
gi|213854586 - gi|213854586|ref|ZP_03382826.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
gi|199602212, gi... - gi|200389767|ref|ZP_03216378.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
GPMA_SALTI - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhi GN=gpmA PE=3 SV=3
gi|204320976, gi... - gi|204929982|ref|ZP_03221003.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
gi|213163241 - gi|213163241|ref|ZP_03348951.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
gi|213420657 - gi|213420657|ref|ZP_03353723.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
gi|16759697 - gi|16759697|ref|NP_455314.1| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Typhi...
GPMA_SALNS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella newport (strain SL254) GN=gp...
gi|194456919, gi... - gi|194470555|ref|ZP_03076539.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
GPMA_SALTI - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhi GN=gpmA PE=3 SV=3
GPMA_SALSV - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella schwarzengrund (strain CVM19...
gi|29138161, gi|... - gi|29142530|ref|NP_805872.1| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Typhi...
gi|197264300, gi... - gi|197264300|ref|ZP_03164374.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell...
GPMA_SALCH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmA PE=3 SV...
gi|205334784, gi... - gi|205334784|gb|EDZ21548.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en...
gi|168236694, gi... - gi|197290171|gb|EDY29528.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en...
GPMA_SALCH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella choleraesuis (strain SC-B67)...
1.0E-47 [55..291] [5..224]
GPMA_ECO57 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O157:H7 GN=gpmA PE=3 S...
gi|254591305, gi... - gi|254791905|ref|YP_003076742.1| phosphoglyceromutase 1 [Escherichia coli O157:H7 str. TW14359], gi|...
gi|30040333, gi|... - gi|30062089|ref|NP_836260.1| phosphoglyceromutase [Shigella flexneri 2a str. 2457T], gi|30040333|gb|...
gi|253972719, gi... - gi|254160818|ref|YP_003043926.1| phosphoglyceromutase [Escherichia coli B str. REL606], gi|253972719...
GPMA_ECOL6 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O6:H1 (strain CFT073 /...
gi|12513684, gi|... - gi|15800464|ref|NP_286476.1| phosphoglyceromutase [Escherichia coli O157:H7 EDL933], gi|12513684|gb|...
gi|253774281, gi... - gi|254287606|ref|YP_003053354.1| phosphoglyceromutase [Escherichia coli BL21(DE3)], gi|253976913|gb|...
EG11699 - phosphoglyceromutase 1 / Phosphoglycerate mutase, 2,3-bisphosphoglycerate-dependent; dPGM; Fur regul...
gi|251784237, gi... - gi|251784237|ref|YP_002998541.1| hypothetical protein B21_00697 [Escherichia coli BL21], gi|24237651...
GPMA_ECOBW - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain K12 / MC4100 /...
gi|227839037, gi... - gi|227884285|ref|ZP_04002090.1| phosphoglyceromutase [Escherichia coli 83972], gi|227839037|gb|EEJ49...
GPMA_ECOL6 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O6 GN=gpmA PE=3 SV=2
GPMA_ECOLI - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)...
GPMA_SHIFL - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Shigella flexneri GN=gpmA PE=3 SV=2
GPMA_SHIBS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Shigella boydii serotype 4 (strain Sb22...
gi|56383240, gi|... - gi|56479689|ref|NP_706486.2| phosphoglyceromutase [Shigella flexneri 2a str. 301], gi|56383240|gb|AA...
gi|188487599, gi... - gi|75511357|ref|ZP_00734042.1| COG0588: Phosphoglycerate mutase 1 [Escherichia coli 53638], gi|18849...
GPMA_SHISS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Shigella sonnei (strain Ss046) GN=gpmA ...
GPMA_ECOLC - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain ATCC 8739 / DS...
GPMA_SHIB3 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Shigella boydii serotype 18 (strain CDC...
GPMA_ECOHS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O9:H4 (strain HS) GN=g...
gi|83584860, gi|... - gi|83584860|ref|ZP_00923519.1| COG0588: Phosphoglycerate mutase 1 [Escherichia coli 101-1], gi|19443...
gi|75237091, gi|... - gi|75237091|ref|ZP_00721145.1| COG0588: Phosphoglycerate mutase 1 [Escherichia coli F11], gi|1911741...
gi|192926788, gi... - gi|75256339|ref|ZP_00728009.1| COG0588: Phosphoglycerate mutase 1 [Escherichia coli E22], gi|1930656...
gi|75228378, gi|... - gi|75228378|ref|ZP_00715026.1| COG0588: Phosphoglycerate mutase 1 [Escherichia coli B7A], gi|1911684...
gi|192957134, gi... - gi|75235772|ref|ZP_00719927.1| COG0588: Phosphoglycerate mutase 1 [Escherichia coli E110019], gi|193...
gi|89107606, gi|... - gi|89107606|ref|AP_001386.1| phosphoglyceromutase 1 [Escherichia coli str. K-12 substr. W3110], gi|4...
gi|13360242, gi|... - gi|15830037|ref|NP_308810.1| phosphoglyceromutase [Escherichia coli O157:H7 str. Sakai], gi|13360242...
GPMA_ECOL5 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O6:K15:H31 (strain 536...
GPMA_SHIF8 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Shigella flexneri serotype 5b (strain 8...
gi|168763345, gi... - gi|189366417|gb|EDU84833.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c...
gi|189363482, gi... - gi|189363482|gb|EDU81901.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c...
gi|168776500, gi... - gi|187768149|gb|EDU31993.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c...
gi|189002856, gi... - gi|189002856|gb|EDU71842.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c...
gi|189373126, gi... - gi|189373126|gb|EDU91542.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c...
gi|168800813, gi... - gi|189376939|gb|EDU95355.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c...
GPMA_ECODH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain K12 / DH10B) G...
GPMA_ECOSM - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain SMS-3-5 / SECE...
gi|168750247, gi... - gi|188015491|gb|EDU53613.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c...
gi|189355841, gi... - gi|189355841|gb|EDU74260.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherichia c...
GPMA_ESCF3 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia fergusonii (strain ATCC 354...
GPMA_ECO8A - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O8 (strain IAI1) GN=gp...
GPMA_ECO45 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O45:K1 (strain S88 / E...
GPMA_ECO81 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O81 (strain ED1a) GN=g...
GPMA_ECO55 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain 55989 / EAEC) ...
GPMA_ECO7I - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O7:K1 (strain IAI39 / ...
GPMA_ECOLU - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O17:K52:H18 (strain UM...
gi|170769020, gi... - gi|170769020|ref|ZP_02903473.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherich...
EG11699 - phosphoglyceromutase 1 / Phosphoglycerate mutase, 2,3-bisphosphoglycerate-dependent; dPGM; Fur regul...
gi|195936743 - gi|195936743|ref|ZP_03082125.1| phosphoglyceromutase 1 [Escherichia coli O157:H7 str. EC4024]
gi|208732453, gi... - gi|208815805|ref|ZP_03256984.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherich...
GPMA_ECOK1 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O1:K1 / APEC GN=gpmA P...
gi|208822250, gi... - gi|208822250|ref|ZP_03262569.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherich...
gi|124531872, gi... - gi|124531872|ref|ZP_01701971.1| phosphoglycerate mutase 1 family [Escherichia coli B], gi|124498293|...
GPMA_ECO5E - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O157:H7 (strain EC4115...
sp|B7ULM8|GPMA_ECO27 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O127:H6 (strain E2348/...
GPMA_ECOSE - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli (strain SE11) GN=gpmA ...
GPMA_ECO27 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Escherichia coli O127:H6 (strain E2348/...
gi|217325929, gi... - gi|217325929|ref|ZP_03442013.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Escherich...
1.0E-47 [55..294] [5..227]
GPMA_ECOLI - (P62707) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutas...
GPMA_ECOL6 - (P62708) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutas...
GPMA_ECO57 - (P62709) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutas...
GPMA_SHIFL - (P62710) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutas...
1.0E-47 [55..294] [4..226]
gi|149291242, gi... - gi|149366868|ref|ZP_01888902.1| phosphoglycerate mutase 1 [Yersinia pestis CA88-4125], gi|149291242|...
GPMA_YERPP - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Yersinia pestis (strain Pestoides F) GN...
GPMA_YERPG - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Yersinia pestis bv. Antiqua (strain Ang...
gi|165923463, gi... - gi|165924403|ref|ZP_02220235.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Yersinia ...
gi|165938334, gi... - gi|165938334|ref|ZP_02226892.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Yersinia ...
GPMA_YERPS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Yersinia pseudotuberculosis serotype I ...
GPMA_YERPE - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Yersinia pestis GN=gpmA PE=3 SV=3
gi|15979199, gi|... - gi|218928300|ref|YP_002346175.1| phosphoglycerate mutase 1 [Yersinia pestis CO92], gi|16121432|ref|N...
GPMA_YERPS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Yersinia pseudotuberculosis GN=gpmA PE=...
GPMA_YERP3 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Yersinia pseudotuberculosis serotype O:...
GPMA_YERPA - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Yersinia pestis bv. Antiqua (strain Ant...
GPMA_YERPN - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Yersinia pestis bv. Antiqua (strain Nep...
gi|166011548, gi... - gi|166011548|ref|ZP_02232446.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Yersinia ...
gi|166211470, gi... - gi|166211470|ref|ZP_02237505.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Yersinia ...
gi|167050137, gi... - gi|167400188|ref|ZP_02305701.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Yersinia ...
gi|229703894, gi... - gi|229894009|ref|ZP_04509195.1| phosphoglyceromutase 1 [Yersinia pestis Pestoides A], gi|229703894|g...
gi|167419786, gi... - gi|167419786|ref|ZP_02311539.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Yersinia ...
gi|229689522, gi... - gi|229843175|ref|ZP_04463321.1| phosphoglyceromutase 1 [Yersinia pestis biovar Orientalis str. India...
gi|167057206, gi... - gi|167424357|ref|ZP_02316110.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Yersinia ...
gi|229697437, gi... - gi|229841071|ref|ZP_04461230.1| phosphoglyceromutase 1 [Yersinia pestis biovar Orientalis str. PEXU2...
GPMA_YERPY - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Yersinia pseudotuberculosis serotype O:...
GPMA_YERPB - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Yersinia pseudotuberculosis serotype IB...
2.0E-47 [55..291] [5..224]

Back

Predicted Domain #1
Region A:
Residues: [1-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRAVPGYF AAYPSEGFQG LDSTKYDHLE LINHKNWKEL YHAIPRNTKN RHYKLLILAR  60
   61 HGQGYHNAAI LRYGMEKWDA YWSLLSGDEH GEWLDSKLTP LGKDQVRRTG SNVLLPMAKQ 120
  121 LGMLPHVFFS SPMRRCLETF IESWTPVLAE TQELPAGTKI STRIIEGLRE TLGSHTCDKR 180
  181 VAHSMAVDEY QDFSTESGHT VHWQYVPDYP EDDELWLPDH RETCAEMDKR TLNGLFELFN 240
  241 QLSSEEKFIS LTCHSGVIQS VLRNLQHPPI YNLDTGKVVA VVVEVPVNTA DRGRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.39794
Match: 1bif__
Description: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain; 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.50412762608586 bayes_pls_golite062009
phosphatase activity 1.3780102824419 bayes_pls_golite062009
catalytic activity 1.37714494241232 bayes_pls_golite062009
phosphoric ester hydrolase activity 1.17717226086152 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.689507847329055 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.624252959669525 bayes_pls_golite062009
kinase activity 0.520786647366768 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.403991727699472 bayes_pls_golite062009
protein binding 0.236742803345453 bayes_pls_golite062009
intramolecular transferase activity 0.17180601190736 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle