YRC Public Data Repository - Protein Structure Prediction

Protein:	YKL069W
Organism:	Saccharomyces cerevisiae
Length:	180 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKL069W.

Description	E-value	Query Range	Subject Range
gi\|207343510 - gi\|207343510\|gb\|EDZ70953.1\| YKL069Wp-like protein [Saccharomyces cerevisiae AWRI1631] YKL069W - Methionine-R-sulfoxide reductase, reduces the R enantiomer of free Met-SO, in contrast to Ycl033Cp w... FRMSR_YEAST - Free methionine-R-sulfoxide reductase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YK...	4.0E-50	[1..180]	[1..180]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-37	[19..179]	[12..185]
gi\|241374667, gi... - gi\|241761048\|ref\|ZP_04759137.1\| GAF domain-containing-like protein [Zymomonas mobilis subsp. mobilis... YLP6_ZYMMO, Y507... - (O66116) Hypothetical UPF0067 protein in lpd 3'region (ORF6), Protein ZMO0507 OS=Zymomonas mobilis G... Y507_ZYMMO - Protein ZMO0507 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO0507 PE=3 ... gi\|2995388\|emb\|C... - hypothetical protein YKG9 [Zymomonas mobilis]	2.0E-36	[14..177]	[3..160]
gi\|85103505 - gi\|85103505\|ref\|XP_961529.1\| hypothetical protein NCU01163 [Neurospora crassa OR74A] gi\|32412352, gi\|... - gi\|32412352\|ref\|XP_326656.1\| hypothetical protein [Neurospora crassa], gi\|28923076\|gb\|EAA32293.1\| pr...	4.0E-36	[9..179]	[3..160]
gi\|15615770, gi\|... - gi\|15615770\|ref\|NP_244074.1\| hypothetical protein BH3208 [Bacillus halodurans C-125], gi\|10175831\|db... gi\|25322149 - pir\|\|H84050 hypothetical protein BH3208 [imported] - Bacillus halodurans (strain C-125)	2.0E-35	[22..177]	[12..159]
gi\|16414124, gi\|... - pir\|\|AD1637 hypothetical protein homolog lin1637 [imported] - Listeria innocua (strain Clip11262), g... gi\|16800705 - gi\|16800705\|ref\|NP_470973.1\| hypothetical protein lin1637 [Listeria innocua Clip11262]	3.0E-35	[18..178]	[8..162]
gi\|25399782 - pir\|\|F87531 conserved hypothetical protein CC2279 [imported] - Caulobacter crescentus gi\|16126518, gi\|... - gi\|16126518\|ref\|NP_421082.1\| hypothetical protein CC_2279 [Caulobacter crescentus CB15], gi\|13423794...	6.0E-35	[19..169]	[79..225]
gi\|11279818 - pir\|\|D81031 conserved hypothetical protein NMB1886 [imported] - Neisseria meningitidis (strain MC58 ... gi\|7227145, gi\|1... - gi\|7227145\|gb\|AAF42220.1\| conserved hypothetical protein [Neisseria meningitidis MC58], gi\|15677721\|...	7.0E-35	[12..178]	[2..161]
gi\|16411024, gi\|... - pir\|\|AC1274 hypothetical protein lmo1595 [imported] - Listeria monocytogenes (strain EGD-e), gi\|1641... gi\|16803635 - gi\|16803635\|ref\|NP_465120.1\| hypothetical protein lmo1595 [Listeria monocytogenes EGD-e] gi\|224501465 - gi\|224501465\|ref\|ZP_03669772.1\| hypothetical protein LmonFR_02942 [Listeria monocytogenes FSL R2-561...	1.0E-34	[18..178]	[8..162]
gi\|218767536, gi... - gi\|7379307\|emb\|CAB83862.1\| hypothetical protein NMA0571 [Neisseria meningitidis Z2491], gi\|218767536... gi\|11279817 - pir\|\|H81975 hypothetical protein NMA0571 [imported] - Neisseria meningitidis (strain Z2491 serogroup...	2.0E-34	[12..178]	[10..169]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSTGFHHA DHVNYSSNLN KEEILEQLLL SYEGLSDGQV NWVCNLSNAS SLIWHAYKSL  60
   61 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1081.0
Match:	1f5mA_
Description:	Hypothetical protein ykl069wp
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.10915247373974	bayes_pls_golite062009
transcription regulator activity	1.5060301152751	bayes_pls_golite062009
nucleic acid binding	1.32736924614801	bayes_pls_golite062009
DNA binding	1.31562572870243	bayes_pls_golite062009
transcription factor activity	1.09596276636897	bayes_pls_golite062009
protein binding	0.0688725708976988	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [62-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDINWAGFYV TQASEENTLI LGPFQGKVAC QMIQFGKGVC GTAASTKETQ IVPDVNKYPG  60
   61 HIACDGETKS EIVVPIISND GKTLGVIDID CLDYEGFDHV DKEFLEKLAK LINKSCVFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1081.0
Match:	1f5mA_
Description:	Hypothetical protein ykl069wp
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: