YRC Public Data Repository - Protein Structure Prediction

Protein:	YJR142W
Organism:	Saccharomyces cerevisiae
Length:	342 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJR142W.

Description	E-value	Query Range	Subject Range
YJR142W - Putative protein of unknown function; GST fusion protein is a Dbf2-Mob1 phosphoylation target in a p... YJ9J_YEAST - Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR142W ...	0.0	[1..342]	[1..342]
TNR3_SCHPO - Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tnr3 PE=3 SV=1 tnr3 - thiamine diphosphokinase Tnr3	2.0E-65	[28..339]	[16..305]
NUD20_ARATH - Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1	6.0E-65	[17..335]	[74..371]
CG12567-PF - This gene is referred to in FlyBase by the symbol Dmel\CG12567 (CG12567, FBgn0039958). It is a prote...	1.0E-57	[51..336]	[25..296]
IDI2_CAMAC - Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1	5.0E-54	[83..323]	[45..295]
gi\|13603406 - gi\|13603406\|dbj\|BAB40973.1\| isopentenyl diphosphate isomerase 1 [Nicotiana tabacum]	2.0E-53	[90..323]	[40..276]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-50	[64..317]	[5..271]
gi\|3421421, gi\|2... - gi\|3421421\|gb\|AAC32208.1\| isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Haematoco...	9.0E-50	[64..317]	[5..283]
gi\|6856556 - gi\|6856556\|gb\|AAF29976.1\|AF188063_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase...	1.0E-49	[79..323]	[10..249]
gi\|9971806 - gi\|9971806\|gb\|AAG10423.1\| isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase [Tagetes ...	1.0E-49	[116..323]	[34..248]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVEKSSKGL EVLVRTQEDD LEGFSFLEIM DRVDPLPLDF ENYKNFKEGI YYMCTHDGTK  60
   61 IGFVLKFAIN EMETVCSEIF EETFQLDESR HELRFKSEDF DHRNNLIDQL ARKMYLESSL 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVKGWRNEKY AVWVNKKPYV LVERAVAGVL GIITYGIHIN GYVLDPKSKK VQFWVPRRSK  60
   61 TKQTWPLMLD NIIAGGLGYP YGIYETVLKE SMEEANLEKS VIEDNIKATG SVSYLYFTGD 120
  121 ISVTKFNKES DFIVGEVQYV YDLKLSEDII PKPNDGEVES FNLFSLQETI NALRKKEFKP 180
  181 NCALVMVDFL IRHGYITPEN EPNYLELVTR MHRRLPFPTL N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1hztA_
Description:	Isopentenyl diphosphate isomerase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits