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View Structure Prediction Details

Protein: VPS25
Organism: Saccharomyces cerevisiae
Length: 202 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS25.

Description E-value Query
Range
Subject
Range
gi|151945167 - gi|151945167|gb|EDN63418.1| vacuolar sorting protein [Saccharomyces cerevisiae YJM789]
gi|190409575 - gi|190409575|gb|EDV12840.1| vacuolar protein sorting protein 25 [Saccharomyces cerevisiae RM11-1a]
VPS25 - Component of the ESCRT-II complex, which is involved in ubiquitin-dependent sorting of proteins into...
VPS25_YEAST - Vacuolar protein-sorting-associated protein 25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...
3.0E-74 [1..202] [1..202]
VPS25_MOUSE - Vacuolar protein-sorting-associated protein 25 OS=Mus musculus GN=Vps25 PE=1 SV=1
gi|55716005 - gb|AAH86063.1| Unknown (protein for MGC:98421) [Xenopus laevis]
tr|G3HLY6|G3HLY6... - Vacuolar protein-sorting-associated protein 25 OS=Cricetulus griseus GN=I79_011730 PE=4 SV=1
1.0E-58 [5..199] [8..175]
ENSMMUT000000030... - null, null
CCDS11438.1_1 - null
ENSPTRT00000016956 - null
VPS25 - vacuolar protein sorting 25 homolog (S. cerevisiae)
4.0E-58 [5..199] [8..175]
VPS25_SCHPO - Vacuolar protein-sorting-associated protein 25 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...
vps25 - ESCRT II complex subunit Vps25
8.0E-55 [4..202] [3..173]
VPS25_ARATH - Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana GN=VPS25 PE=1 SV=1
1.0E-54 [4..200] [9..176]
gi|16945422 - gi|16945422|emb|CAD11782.1| conserved hypothetical protein [Neurospora crassa]
gi|164426597, gi... - gi|164426597|ref|XP_957537.2| hypothetical protein NCU03898 [Neurospora crassa OR74A], gi|157071400|...
1.0E-54 [5..196] [36..220]
vps-25 - status:Confirmed UniProt:Q9U354 protein_id:CAB04889.2
1.0E-53 [5..202] [14..183]
gi|14582210 - gi|14582210|gb|AAK69405.1|AF274570_1 P protein [Paramecium primaurelia]
9.0E-41 [14..190] [41..191]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALPPVYSF PPLYTRQPNS LTRRQQISTW IDIISQYCKT KKIWYMSVDG TVINDNELDS  60
   61 GSTDNDDSKK ISKNLFNNED IQRSVSQVFI DEIWSQMTKE GKCLPIDQSG RRSSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.311 d.58.14 Ribosomal protein S6
View Download 0.517 d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.432 a.142.1 PTS-regulatory domain, PRD
View Download 0.327 d.58.43 Mechanosensitive channel protein MscS (YggB), C-terminal domain
View Download 0.309 d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.285 d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.267 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.256 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.255 a.2.3 Chaperone J-domain
View Download 0.249 d.80.1 Tautomerase/MIF
View Download 0.249 d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.238 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.237 a.1.1 Globin-like
View Download 0.218 d.65.1 Hedgehog/DD-pepidase
View Download 0.203 a.118.8 TPR-like
View Download 0.202 d.58.43 Mechanosensitive channel protein MscS (YggB), C-terminal domain
View Download 0.200 d.58.41 SEA domain

Predicted functions:

Term Confidence Notes
transcription regulator activity 5.55329976718261 bayes_pls_golite062009
DNA binding 5.08959163553491 bayes_pls_golite062009
nucleic acid binding 4.99681957904233 bayes_pls_golite062009
transcription factor activity 4.33152142980289 bayes_pls_golite062009
transcription repressor activity 3.85678231380989 bayes_pls_golite062009
binding 3.52874320222492 bayes_pls_golite062009
RNA polymerase II transcription factor activity 2.60738445921725 bayes_pls_golite062009
sequence-specific DNA binding 2.48053910222825 bayes_pls_golite062009
transcription activator activity 2.37668609508629 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.35380365970626 bayes_pls_golite062009
transferase activity 1.0863867010063 bayes_pls_golite062009
molecular transducer activity 0.968719315363638 bayes_pls_golite062009
signal transducer activity 0.968719315363638 bayes_pls_golite062009
specific transcriptional repressor activity 0.96257232341735 bayes_pls_golite062009
transcription factor binding 0.85714789329232 bayes_pls_golite062009
protein binding 0.753698599635855 bayes_pls_golite062009
specific RNA polymerase II transcription factor activity 0.66743181561551 bayes_pls_golite062009
transcription corepressor activity 0.322180400748724 bayes_pls_golite062009
RNA polymerase II transcription factor activity, enhancer binding 0.23177057841536 bayes_pls_golite062009
structure-specific DNA binding 0.217544912085963 bayes_pls_golite062009
hydrolase activity 0.140191206949582 bayes_pls_golite062009
ubiquitin-protein ligase activity 0.136726704233672 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [116-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTTRYFILW KSLDSWASLI LQWFEDSGKL NQVITLYELS EGDETVNWEF HRMPESLLYY  60
   61 CLKPLCDRNR ATMLKDENDK VIAIKVV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.755 0.041 protein targeting to vacuole c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.794 0.017 protein targeting to vacuole d.68.3 SirA-like
View Download 0.794 N/A N/A d.58.11 EF-G/eEF-2 domains III and V
View Download 0.741 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.736 N/A N/A c.102.1 Cell-division inhibitor MinC, N-terminal domain
View Download 0.717 N/A N/A d.67.2 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
View Download 0.716 N/A N/A d.68.3 SirA-like
View Download 0.696 N/A N/A d.68.1 Translation initiation factor IF3, C-terminal domain
View Download 0.674 N/A N/A d.45.1 ClpS-like
View Download 0.667 N/A N/A d.68.1 Translation initiation factor IF3, C-terminal domain
View Download 0.660 N/A N/A d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.660 N/A N/A d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.647 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.646 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.638 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.635 N/A N/A a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.633 N/A N/A d.57.1 DNA damage-inducible protein DinI
View Download 0.626 N/A N/A d.21.1 Diaminopimelate epimerase-like
View Download 0.617 N/A N/A d.58.17 Metal-binding domain
View Download 0.611 N/A N/A c.84.1 Phosphoglucomutase, first 3 domains
View Download 0.596 N/A N/A d.58.12 eEF-1beta-like
View Download 0.596 N/A N/A c.49.1 Pyruvate kinase, C-terminal domain
View Download 0.589 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.585 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.585 N/A N/A a.28.1 ACP-like
View Download 0.569 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.560 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.557 N/A N/A d.58.49 YajQ-like
View Download 0.533 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.530 N/A N/A a.60.6 DNA polymerase beta, N-terminal domain-like
View Download 0.526 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.522 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.520 N/A N/A c.102.1 Cell-division inhibitor MinC, N-terminal domain
View Download 0.510 N/A N/A a.74.1 Cyclin-like
View Download 0.506 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.495 N/A N/A d.58.17 Metal-binding domain
View Download 0.495 N/A N/A d.58.5 GlnB-like
View Download 0.494 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.480 N/A N/A d.58.3 Protease propeptides/inhibitors
View Download 0.478 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.476 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.464 N/A N/A d.58.17 Metal-binding domain
View Download 0.458 N/A N/A c.44.2 Enzyme IIB-cellobiose
View Download 0.458 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.456 N/A N/A d.68.4 YhbY-like
View Download 0.454 N/A N/A a.60.3 C-terminal domain of RNA polymerase alpha subunit
View Download 0.450 N/A N/A d.68.3 SirA-like
View Download 0.441 N/A N/A c.78.2 Aspartate/glutamate racemase
View Download 0.441 N/A N/A c.13.2 Anti-sigma factor antagonist SpoIIaa
View Download 0.437 N/A N/A d.58.8 Viral DNA-binding domain
View Download 0.426 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.423 N/A N/A c.53.1 Resolvase-like
View Download 0.418 N/A N/A c.47.1 Thioredoxin-like
View Download 0.413 N/A N/A a.77.1 DEATH domain
View Download 0.413 N/A N/A c.15.1 BRCT domain
View Download 0.409 N/A N/A c.52.2 tRNA splicing endonuclease, C-terminal domain
View Download 0.405 N/A N/A d.58.12 eEF-1beta-like
View Download 0.403 N/A N/A d.68.4 YhbY-like
View Download 0.403 N/A N/A c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.399 N/A N/A c.44.2 Enzyme IIB-cellobiose
View Download 0.395 N/A N/A d.58.10 Acylphosphatase-like
View Download 0.394 N/A N/A d.17.2 Copper amine oxidase, domains 1 and 2
View Download 0.393 N/A N/A d.58.42 N-utilization substance G protein NusG, N-terminal domain
View Download 0.393 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.393 N/A N/A c.15.1 BRCT domain
View Download 0.391 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.388 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.382 N/A N/A d.68.7 R3H domain
View Download 0.382 N/A N/A c.23.1 CheY-like
View Download 0.382 N/A N/A d.41.3 Pyrimidine nucleoside phosphorylase C-terminal domain
View Download 0.380 N/A N/A d.58.42 N-utilization substance G protein NusG, N-terminal domain
View Download 0.374 N/A N/A b.85.7 SET domain
View Download 0.371 N/A N/A f.34.1 Mechanosensitive channel protein MscS (YggB), transmembrane region
View Download 0.371 N/A N/A c.5.1 MurCD N-terminal domain
View Download 0.368 N/A N/A c.84.1 Phosphoglucomutase, first 3 domains
View Download 0.367 N/A N/A d.21.1 Diaminopimelate epimerase-like
View Download 0.366 N/A N/A a.109.1 Class II MHC-associated invariant chain ectoplasmic trimerization domain
View Download 0.363 N/A N/A c.15.1 BRCT domain
View Download 0.363 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.363 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.361 N/A N/A d.58.49 YajQ-like
View Download 0.361 N/A N/A d.58.35 Pseudouridine synthase
View Download 0.357 N/A N/A d.58.24 CheY-binding domain of CheA
View Download 0.356 N/A N/A d.58.38 Urease metallochaperone UreE, C-terminal domain
View Download 0.355 N/A N/A d.74.3 RBP11-like subunits of RNA polymerase
View Download 0.354 N/A N/A d.68.7 R3H domain
View Download 0.349 N/A N/A d.58.14 Ribosomal protein S6
View Download 0.346 N/A N/A c.15.1 BRCT domain
View Download 0.344 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.344 N/A N/A c.15.1 BRCT domain
View Download 0.344 N/A N/A d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
View Download 0.342 N/A N/A d.58.43 Mechanosensitive channel protein MscS (YggB), C-terminal domain
View Download 0.341 N/A N/A c.15.1 BRCT domain
View Download 0.340 N/A N/A d.58.8 Viral DNA-binding domain
View Download 0.340 N/A N/A d.58.36 Sulfite reductase, domains 1 and 3
View Download 0.340 N/A N/A d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.339 N/A N/A d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.338 N/A N/A d.205.1 GTP cyclohydrolase I feedback regulatory protein, GFRP
View Download 0.336 N/A N/A c.52.1 Restriction endonuclease-like
View Download 0.336 N/A N/A a.112.1 Description not found.
View Download 0.335 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.334 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.330 N/A N/A d.67.2 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
View Download 0.330 N/A N/A d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.324 N/A N/A f.34.1 Mechanosensitive channel protein MscS (YggB), transmembrane region
View Download 0.323 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.322 N/A N/A d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.318 N/A N/A d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.318 N/A N/A d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
View Download 0.311 N/A N/A c.15.1 BRCT domain
View Download 0.310 N/A N/A d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.309 N/A N/A a.28.1 ACP-like
View Download 0.309 N/A N/A d.95.2 Homing endonucleases
View Download 0.308 N/A N/A a.60.6 DNA polymerase beta, N-terminal domain-like
View Download 0.306 N/A N/A c.78.2 Aspartate/glutamate racemase
View Download 0.306 N/A N/A c.47.1 Thioredoxin-like
View Download 0.303 N/A N/A d.58.17 Metal-binding domain
View Download 0.303 N/A N/A c.23.1 CheY-like
View Download 0.303 N/A N/A d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.301 N/A N/A d.93.1 SH2 domain
View Download 0.301 N/A N/A d.49.1 Signal recognition particle alu RNA binding heterodimer, SRP9/14
View Download 0.298 N/A N/A d.58.42 N-utilization substance G protein NusG, N-terminal domain
View Download 0.297 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.297 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.295 N/A N/A d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.292 N/A N/A d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.290 N/A N/A d.58.11 EF-G/eEF-2 domains III and V
View Download 0.290 N/A N/A d.58.5 GlnB-like
View Download 0.286 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.283 N/A N/A d.93.1 SH2 domain
View Download 0.282 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.282 N/A N/A c.15.1 BRCT domain
View Download 0.281 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.280 N/A N/A d.58.5 GlnB-like
View Download 0.279 N/A N/A d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.277 N/A N/A d.21.1 Diaminopimelate epimerase-like
View Download 0.277 N/A N/A c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.273 N/A N/A c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.273 N/A N/A a.60.1 SAM/Pointed domain
View Download 0.272 N/A N/A d.58.1 4Fe-4S ferredoxins
View Download 0.271 N/A N/A c.15.1 BRCT domain
View Download 0.270 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.270 N/A N/A b.1.1 Immunoglobulin
View Download 0.269 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.267 N/A N/A a.74.1 Cyclin-like
View Download 0.264 N/A N/A d.89.1 Origin of replication-binding domain, RBD-like
View Download 0.263 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.262 N/A N/A c.47.1 Thioredoxin-like
View Download 0.261 N/A N/A d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.260 N/A N/A d.58.35 Pseudouridine synthase
View Download 0.260 N/A N/A d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
View Download 0.256 N/A N/A d.58.17 Metal-binding domain
View Download 0.255 N/A N/A a.112.1 Description not found.
View Download 0.254 N/A N/A c.114.1 YchN-like
View Download 0.254 N/A N/A c.97.1 Cytidine deaminase-like
View Download 0.254 N/A N/A d.58.10 Acylphosphatase-like
View Download 0.253 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.252 N/A N/A d.58.8 Viral DNA-binding domain
View Download 0.250 N/A N/A c.15.1 BRCT domain
View Download 0.246 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.245 N/A N/A d.58.11 EF-G/eEF-2 domains III and V
View Download 0.244 N/A N/A d.17.1 Cystatin/monellin
View Download 0.242 N/A N/A c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.241 N/A N/A d.130.1 S-adenosylmethionine synthetase
View Download 0.240 N/A N/A d.68.4 YhbY-like
View Download 0.240 N/A N/A d.58.42 N-utilization substance G protein NusG, N-terminal domain
View Download 0.240 N/A N/A d.21.1 Diaminopimelate epimerase-like
View Download 0.239 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.239 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.238 N/A N/A d.130.1 S-adenosylmethionine synthetase
View Download 0.236 N/A N/A d.58.3 Protease propeptides/inhibitors
View Download 0.235 N/A N/A a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.235 N/A N/A d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
View Download 0.234 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.228 N/A N/A d.58.17 Metal-binding domain
View Download 0.227 N/A N/A d.89.1 Origin of replication-binding domain, RBD-like
View Download 0.221 N/A N/A d.79.1 YjgF-like
View Download 0.218 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.218 N/A N/A d.58.3 Protease propeptides/inhibitors
View Download 0.218 N/A N/A d.58.14 Ribosomal protein S6
View Download 0.217 N/A N/A a.159.1 Protein serine/threonine phosphatase 2C, C-terminal domain
View Download 0.217 N/A N/A d.58.13 Anticodon-binding domain of PheRS
View Download 0.216 N/A N/A d.58.5 GlnB-like
View Download 0.216 N/A N/A d.58.7 RNA-binding domain, RBD
View Download 0.215 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.213 N/A N/A d.58.43 Mechanosensitive channel protein MscS (YggB), C-terminal domain
View Download 0.212 N/A N/A c.23.1 CheY-like
View Download 0.211 N/A N/A d.206.1 YggU-like
View Download 0.208 N/A N/A d.58.5 GlnB-like
View Download 0.207 N/A N/A c.44.2 Enzyme IIB-cellobiose
View Download 0.204 N/A N/A c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.203 N/A N/A c.84.1 Phosphoglucomutase, first 3 domains


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle