| Protein: | TAH11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 604 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAH11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..604] | [1..604] |
|
Region A: Residues: [1-604] |
1 11 21 31 41 51
| | | | | |
1 MSGTANSRRK EVLRVPVIDL NRVSDEEQLL PVVRAILLQH DTFLLKNYAN KAVLDALLAG 60
61 LTTKDLPDTS QGFDANFTGT LPLEDDVWLE QYIFDTDPQL RFDRKCRNES LCSIYSRLFK 120
121 LGLFFAQLCV KSVVSSAELQ DCISTSHYAT KLTRYFNDNG STHDGADAGA TVLPTGDDFQ 180
181 YLFERDYVTF LPTGVLTIFP CAKAIRYKPS TMATTDNSWV SIDEPDCLLF HTGTLLARWS 240
241 QGMHTTSPLQ IDPRANIVSL TIWPPLTTPI SSKGEGTIAN HLLEQQIKAF PKVAQQYYPR 300
301 ELSILRLQDA MKFVKELFTV CETVLSLNAL SRSTGVPPEL HVLLPQISSM MKRKIVQDDI 360
361 LKLLTIWSDA YVVELNSRGE LTMNLPKRDN LTTLTNKSRT LAFVERAESW YQQVIASKDE 420
421 IMTDVPAFKI NKRRSSSNSK TVLSSKVQTK SSNANALNNS RYLANSKENF MYKEKMPDSQ 480
481 ANLMDRLRER ERRSAALLSQ RQKRYQQFLA MKMTQVFDIL FSLTRGQPYT ETYLSSLIVD 540
541 SLQDSNNPIG TKEASEILAG LQGILPMDIS VHQVDGGLKV YRWNSLDKNR FSKLLQIHKS 600
601 KQQD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| DNA binding | 2.33472544234344 | bayes_pls_golite062009 |
| damaged DNA binding | 2.29845214826196 | bayes_pls_golite062009 |
| nucleic acid binding | 2.22897758853097 | bayes_pls_golite062009 |
| binding | 1.98369242373199 | bayes_pls_golite062009 |
| catalytic activity | 0.870891682911347 | bayes_pls_golite062009 |
| exonuclease activity | 0.690474252448043 | bayes_pls_golite062009 |
| protein binding | 0.318595689949854 | bayes_pls_golite062009 |
|
Region A: Residues: [332-457] |
1 11 21 31 41 51
| | | | | |
1 RSTGVPPELH VLLPQISSMM KRKIVQDDIL KLLTIWSDAY VVELNSRGEL TMNLPKRDNL 60
61 TTLTNKSRTL AFVERAESWY QQVIASKDEI MTDVPAFKIN KRRSSSNSKT VLSSKVQTKS 120
121 SNANAL
|
| Detection Method: | |
| Confidence: | 1.44 |
| Match: | 1wlqC |
| Description: | Strucure of Geminin-Cdt1 complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.98098149944065 | bayes_pls_golite062009 |
| DNA binding | 4.60314587965928 | bayes_pls_golite062009 |
| nucleic acid binding | 4.41560500044233 | bayes_pls_golite062009 |
| transcription factor activity | 3.83751005834021 | bayes_pls_golite062009 |
| binding | 3.37660003833383 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.84400558797599 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.21432668306508 | bayes_pls_golite062009 |
| transcription activator activity | 2.05647866476552 | bayes_pls_golite062009 |
| transcription repressor activity | 1.93634276716466 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.28362954833504 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.815066484495067 | bayes_pls_golite062009 |
| transcription factor binding | 0.732240481554495 | bayes_pls_golite062009 |
| protein binding | 0.726445167461826 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.437617796040738 | bayes_pls_golite062009 |
| ligase activity | 0.11359254431153 | bayes_pls_golite062009 |
|
Region A: Residues: [458-604] |
1 11 21 31 41 51
| | | | | |
1 NNSRYLANSK ENFMYKEKMP DSQANLMDRL RERERRSAAL LSQRQKRYQQ FLAMKMTQVF 60
61 DILFSLTRGQ PYTETYLSSL IVDSLQDSNN PIGTKEASEI LAGLQGILPM DISVHQVDGG 120
121 LKVYRWNSLD KNRFSKLLQI HKSKQQD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
