| Protein: | TMA22 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 198 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMA22.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-51 | [1..184] | [1..184] |
|
|
9.0E-48 | [4..186] | [9..194] |
|
|
2.0E-47 | [5..188] | [76..243] |
|
|
1.0E-44 | [2..190] | [9..189] |
|
|
1.0E-43 | [5..188] | [31..198] |
|
|
3.0E-43 | [3..183] | [7..178] |
|
|
7.0E-31 | [19..156] | [325..465] |
|
Region A: Residues: [1-62] |
1 11 21 31 41 51
| | | | | |
1 MLREVIYCGI CSYPPEYCEF SGKLKRCKVW LSENHADLYA KLYGTDDNTQ EVEAVTNKLA 60
61 ES
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.506 | a.3.1 | Cytochrome c |
| View | Download | 0.524 | a.77.1 | DEATH domain |
| View | Download | 0.459 | a.4.1 | Homeodomain-like |
| View | Download | 0.430 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.434 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.426 | d.120.1 | Cytochrome b5 |
| View | Download | 0.402 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.389 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.371 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.369 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.353 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.337 | a.3.1 | Cytochrome c |
| View | Download | 0.282 | d.120.1 | Cytochrome b5 |
| View | Download | 0.280 | a.77.1 | DEATH domain |
| View | Download | 0.256 | a.64.1 | Saposin |
| View | Download | 0.240 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.236 | a.39.1 | EF-hand |
| View | Download | 0.220 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.219 | a.4.1 | Homeodomain-like |
| View | Download | 0.219 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.201 | a.139.1 | Type I dockerin domain |
| Term | Confidence | Notes |
| binding | 1.36535619829821 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.221356879029422 | bayes_pls_golite062009 |
| nucleic acid binding | 0.213614307171087 | bayes_pls_golite062009 |
| protein binding | 0.189517592830504 | bayes_pls_golite062009 |
|
Region A: Residues: [63-198] |
1 11 21 31 41 51
| | | | | |
1 SIGEAREEKL EKDLLKIQKK QENREQRELA KKLSSKVIIK REARTKRKFI VAISGLEVFD 60
61 IDMKKLAKTF ASRFATGCSV SKNAEKKEEV VIQGDVMDEV ETYIHSLLEE KGLKDVKVET 120
121 IDAKKKKKPA AEGAAK
|
| Detection Method: | |
| Confidence: | 20.221849 |
| Match: | 1d1rA_ |
| Description: | YciH |
Matching Structure (courtesy of the PDB): |
|
