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View Structure Prediction Details

Protein: YJL206C
Organism: Saccharomyces cerevisiae
Length: 758 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL206C.

Description E-value Query
Range
Subject
Range
YJL206C - Putative protein of unknown function; similar to transcriptional regulators from the Zn[2]-Cys[6] bi...
YJU6_YEAST - Putative transcriptional regulatory protein YJL206C OS=Saccharomyces cerevisiae (strain ATCC 204508 ...
0.0 [1..758] [1..758]
gi|2262189 - gi|2262189|gb|AAB63564.1| FacB [Aspergillus oryzae]
7.0E-86 [40..682] [17..653]
gi|2262187 - gi|2262187|gb|AAB63563.1| FacB [Aspergillus niger]
1.0E-85 [34..678] [11..650]
gi|2262191 - gi|2262191|gb|AAB63565.1| acetate regulatory DNA binding protein FacB [Emericella nidulans]
gi|67516815, gi|... - gi|67516815|ref|XP_658293.1| hypothetical protein AN0689.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
5.0E-85 [34..678] [11..653]
gi|245224 - gi|245224|gb|AAB21394.1| NIT4=protein product involved in nitrate assimilation [Neurospora intermedi...
NIT4_NEUCR - Nitrogen assimilation transcription factor nit-4 - Neurospora crassa
2.0E-83 [1..697] [9..761]
gi|6901427 - gi|6901427|emb|CAB71797.1| pathway-specific nitrogen regulator [Tolypocladium inflatum]
2.0E-83 [2..682] [32..741]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPKESGKPI SCAMKKLKGK RSKILVLSRD AGTNELKPTK GRAHRACIAC RKRKVRCSGN  60
   61 IPCRLCQTNS YECKYDRPPR NSSVFDREVS DDSSLYAQRA SHEREDSKGP ISSIDY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.917458
Match: 1ajyA_
Description: PUT3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.63943202821382 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [117-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKVVETIFPP ETLRQILASS SFNSQNFLDT IKTCLLQGQL NVNQVIRQSL PKDTPWHMQT  60
   61 SVPLPPREIA LKFIQKTWDC ACVLFRFYHR PTIISILDSI YEAEKHGKQY TPEQVKTQPL 120
  121 IYSVLAVGAL FSKEDLSKDS KATREFYTDE GYRYFLEAKN SLDFSNITDI YSIQAIFMMT 180
  181 IFLQCSANLK ACYSFIGIAL RAALKEGLHR RSSIVGPTPI QDETKKRLFW SVYKLDLYMN 240
  241 CILGFPSGID ESDIDQEFPL DVDDENIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [385-669]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIGIKFQDWR TISSCGMNNK HTKLILIMSR IYKLMYSLRR KPLEEDSRTQ IVSLNDQLDN  60
   61 WYAQLPDILK VDTIRYRQTQ PPLTVSANDT SSPYTKPKKL LYLDFLLSKI VLYKPFYHYI 120
  121 SIDPLDIPEF QFQIHMAENC IEVAKKVIQL SYEMITQNLL SGSYWFSIHT IFFSVACLKF 180
  181 YVYQTEKGLI RNGKVDSDIH NATQLGSEIL SLLKGASNAS KRTFEVLNQL FKEFNEKTSV 240
  241 LSEQLLNIVK LQRQESSGAL VPQLQTNNNF TKCQGELHHG QQHHQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [670-758]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPATSLRSIL NLPQGEADLK FQNTNNESHT TTAAQEEYLD KLLAEFEEFD YSINRVLPDV  60
   61 IDFSALIGQD SSANNQIFSS EFSSDPTVN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [622-758]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSVLSEQLLN IVKLQRQESS GALVPQLQTN NNFTKCQGEL HHGQQHHQTP ATSLRSILNL  60
   61 PQGEADLKFQ NTNNESHTTT AAQEEYLDKL LAEFEEFDYS INRVLPDVID FSALIGQDSS 120
  121 ANNQIFSSEF SSDPTVN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle