YRC Public Data Repository - Protein Structure Prediction

Protein:	NCE101
Organism:	Saccharomyces cerevisiae
Length:	53 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NCE101.

Description	E-value	Query Range	Subject Range
gi\|49655474 - gi\|49655474\|emb\|CAG88045.1\| DEHA2E11440p [Debaryomyces hansenii] gi\|50422477, gi\|... - gi\|50422477\|ref\|XP_459806.1\| hypothetical protein DEHA0E12034g [Debaryomyces hansenii CBS767], gi\|49...	55.0	[0..2]	[50..1]
gi\|50547927, gi\|... - gi\|50547927\|ref\|XP_501433.1\| YALI0C04257p [Yarrowia lipolytica], gi\|49647300\|emb\|CAG81732.1\| unnamed... gi\|49647300 - gi\|49647300\|emb\|CAG81732.1\| YALI0C04257p [Yarrowia lipolytica]	48.0	[0..14]	[50..39]

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Predicted Domain #1

Region A:
Residues: [1-53]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQYAPFLLG KFSDPLLAIM VGCLSYYVYE RKMGRPQGHH LHELIKKRWD DRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.816	a.8.1	Bacterial immunoglobulin/albumin-binding domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits