YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP12
Organism:	Saccharomyces cerevisiae
Length:	325 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP12.

Description	E-value	Query Range	Subject Range
gi\|171106 - gi\|171106\|gb\|AAA34442.1\| ATP12 [Saccharomyces cerevisiae]	0.0	[1..325]	[1..325]
ATP12_SCHPO - Protein atp12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp12 PE=2 SV... atp12 - F1-ATPase chaperone Atp12	3.0E-81	[17..320]	[2..270]
FBpp0303527, l(2... - The gene lethal (2) k14505 is referred to in FlyBase by the symbol Dmel\l(2)k14505 (CG8674, FBgn0021...	1.0E-76	[8..322]	[3..264]
ATPF2_MOUSE - ATP synthase mitochondrial F1 complex assembly factor 2 OS=Mus musculus GN=Atpaf2 PE=1 SV=1	2.0E-72	[41..322]	[36..273]
gi\|9758094 - gi\|9758094\|dbj\|BAB08538.1\| unnamed protein product [Arabidopsis thaliana]	5.0E-68	[41..322]	[73..316]
gi\|15965140 - gi\|15965140\|ref\|NP_385493.1\| hypothetical protein SMc01277 [Sinorhizobium meliloti 1021] gi\|15074320 - gi\|15074320\|emb\|CAC45966.1\| Hypothetical protein [Sinorhizobium meliloti 1021]	2.0E-66	[49..320]	[28..256]
gi\|25374568 - pir\|\|AF3374 hypothetical protein BMEI0980 [imported] - Brucella melitensis (strain 16M) gi\|17982939, gi\|... - gi\|17987263\|ref\|NP_539897.1\| hypothetical protein BMEI0980 [Brucella melitensis 16M], gi\|17982939\|gb...	2.0E-62	[50..317]	[31..254]
gi\|25374572, gi\|... - pir\|\|F97538 hypothetical protein (AB009052) [imported] - Agrobacterium tumefaciens (strain C58, Cere... gi\|15888797, gi\|... - gi\|17935373\|ref\|NP_532163.1\| hypothetical protein Atu1473 [Agrobacterium tumefaciens str. C58], gi\|1...	1.0E-60	[49..312]	[28..246]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSLRKGCF IVNSIRLKLP RFYSLNAQPL GTDNTIENNT PTETNRLSKT SQKFWEKVSL  60
   61 NRDVEKGKIA LQLDGRTIKT PLGNGIIVDN AKSLLAYLLK LEWSSLSSLS IKTHSLPLTS 120
  121 LVARCIDLQM TNEP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	1.72024350544232	bayes_pls_golite062009
protein binding	1.2388395457113	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [135-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GCDPQLVAKI GGNSDVIKNQ LLRYLDTDTL LVFSPMNEFE GRLRNAQNEL YIPIIKGMEE  60
   61 FLRNFSSESN IRLQILDAD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.818	0.026	mitochondrial matrix	f.14.1	Voltage-gated potassium channels

Predicted Domain #3

Region A:
Residues: [214-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IHGLRGNQQS DIVKNAAKKY MSSLSPWDLA ILEKTVLTTK SFICGVLLLE NKKDTANLIP  60
   61 ALKTDMDNIV RAATLETIFQ VEKWGEVEDT HDVDKRDIRR KIHTAAIAAF KQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: