Protein: | DLS1 |
Organism: | Saccharomyces cerevisiae |
Length: | 167 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DLS1.
Description | E-value | Query Range |
Subject Range |
|
8.0E-44 | [13..149] | [72..200] |
|
5.0E-41 | [19..143] | [42..154] |
|
2.0E-40 | [19..143] | [42..154] |
|
2.0E-40 | [19..143] | [42..154] |
Region A: Residues: [1-110] |
1 11 21 31 41 51 | | | | | | 1 MNNETSGKET ASAPLCSPKL PVEKVQRIAK NDPEYMDTSD DAFVATAFAT EFFVQVLTHE 60 61 SLHRQQQQQQ QQVPPLPDEL TLSYDDISAA IVHSSDGHLQ FLNDVIPTTK |
Detection Method: | |
Confidence: | 20.0 |
Match: | 1jfiA_ |
Description: | Negative cofactor 2, NC2, alpha chain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
DNA binding | 4.49118409263799 | bayes_pls_golite062009 |
nucleic acid binding | 4.35201412176948 | bayes_pls_golite062009 |
transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 4.04353148658823 | bayes_pls_golite062009 |
binding | 3.27510691458843 | bayes_pls_golite062009 |
transcription factor activity | 2.51581622888695 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 2.38228606466152 | bayes_pls_golite062009 |
transcription repressor activity | 2.3574713307436 | bayes_pls_golite062009 |
transcription corepressor activity | 1.30859203490073 | bayes_pls_golite062009 |
transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
transcription coactivator activity | 1.1297723528047 | bayes_pls_golite062009 |
protein binding | 1.07873333188144 | bayes_pls_golite062009 |
transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.0852726470007639 | bayes_pls_golite062009 |
Region A: Residues: [111-167] |
1 11 21 31 41 51 | | | | | | 1 NLRLLVEENR VRYTTSVMPP NEVYSAYVVN DTAPKPNIVE IDLDNDEDDD EDVTDQE |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.709 | d.9.1 | Interleukin 8-like chemokines |
View | Download | 0.822 | d.9.2 | Description not found. |
View | Download | 0.779 | d.9.2 | Description not found. |
View | Download | 0.738 | d.9.2 | Description not found. |
View | Download | 0.729 | d.9.2 | Description not found. |
View | Download | 0.707 | d.18.1 | ssDNA-binding transcriptional regulator domain |
View | Download | 0.698 | d.9.2 | Description not found. |
View | Download | 0.693 | b.34.1 | C-terminal domain of transcriptional repressors |
View | Download | 0.676 | d.9.2 | Description not found. |
View | Download | 0.674 | b.38.1 | Sm-like ribonucleoproteins |
View | Download | 0.653 | d.9.2 | Description not found. |
View | Download | 0.646 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
View | Download | 0.635 | g.18.1 | Complement control module/SCR domain |
View | Download | 0.628 | d.9.2 | Description not found. |
View | Download | 0.627 | d.9.2 | Description not found. |
View | Download | 0.596 | d.50.1 | dsRNA-binding domain-like |
View | Download | 0.560 | d.9.2 | Description not found. |
View | Download | 0.557 | b.49.1 | N-terminal domain of alpha and beta subunits of F1 ATP synthase |
View | Download | 0.545 | d.9.2 | Description not found. |
View | Download | 0.535 | d.9.1 | Interleukin 8-like chemokines |
View | Download | 0.518 | b.1.2 | Fibronectin type III |
View | Download | 0.500 | b.24.1 | Hyaluronate lyase-like, C-terminal domain |
View | Download | 0.499 | d.9.2 | Description not found. |
View | Download | 0.484 | b.24.1 | Hyaluronate lyase-like, C-terminal domain |
View | Download | 0.460 | b.38.1 | Sm-like ribonucleoproteins |
View | Download | 0.460 | d.9.1 | Interleukin 8-like chemokines |
View | Download | 0.449 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
View | Download | 0.433 | d.9.1 | Interleukin 8-like chemokines |
View | Download | 0.376 | d.9.2 | Description not found. |
View | Download | 0.366 | b.38.1 | Sm-like ribonucleoproteins |
View | Download | 0.346 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
View | Download | 0.343 | b.11.1 | gamma-Crystallin-like |
View | Download | 0.342 | b.1.2 | Fibronectin type III |
View | Download | 0.340 | b.1.2 | Fibronectin type III |
View | Download | 0.338 | b.84.1 | Single hybrid motif |
View | Download | 0.331 | d.9.1 | Interleukin 8-like chemokines |
View | Download | 0.328 | b.38.1 | Sm-like ribonucleoproteins |
View | Download | 0.325 | d.17.1 | Cystatin/monellin |
View | Download | 0.325 | b.71.1 | Glycosyl hydrolase domain |
View | Download | 0.319 | b.40.4 | Nucleic acid-binding proteins |
View | Download | 0.306 | d.17.1 | Cystatin/monellin |
View | Download | 0.305 | b.71.1 | Glycosyl hydrolase domain |
View | Download | 0.304 | b.40.4 | Nucleic acid-binding proteins |
View | Download | 0.270 | d.17.1 | Cystatin/monellin |
View | Download | 0.269 | b.40.4 | Nucleic acid-binding proteins |
View | Download | 0.262 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
View | Download | 0.259 | b.1.2 | Fibronectin type III |
View | Download | 0.247 | d.17.1 | Cystatin/monellin |
View | Download | 0.246 | b.1.18 | E set domains |
View | Download | 0.242 | d.17.1 | Cystatin/monellin |
View | Download | 0.239 | b.71.1 | Glycosyl hydrolase domain |
View | Download | 0.239 | b.1.18 | E set domains |
View | Download | 0.239 | b.40.4 | Nucleic acid-binding proteins |
View | Download | 0.239 | b.71.1 | Glycosyl hydrolase domain |
View | Download | 0.238 | b.1.2 | Fibronectin type III |
View | Download | 0.237 | b.71.1 | Glycosyl hydrolase domain |
View | Download | 0.228 | b.48.1 | mu transposase, C-terminal domain |
View | Download | 0.226 | b.1.2 | Fibronectin type III |
View | Download | 0.226 | d.15.1 | Ubiquitin-like |
View | Download | 0.225 | b.1.18 | E set domains |
View | Download | 0.224 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
View | Download | 0.221 | d.129.1 | TATA-box binding protein-like |
View | Download | 0.220 | b.1.2 | Fibronectin type III |
View | Download | 0.220 | b.1.13 | Superoxide reductase-like |
View | Download | 0.217 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
View | Download | 0.217 | b.38.1 | Sm-like ribonucleoproteins |
View | Download | 0.212 | d.54.1 | Enolase N-terminal domain-like |
View | Download | 0.209 | d.129.1 | TATA-box binding protein-like |