| Protein: | UBX6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 396 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBX6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..396] | [1..396] |
|
|
2.0E-46 | [9..259] | [232..507] |
|
|
7.0E-46 | [7..268] | [147..490] |
|
|
2.0E-43 | [14..261] | [160..422] |
|
|
2.0E-41 | [1..264] | [1..291] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MYEMSGIDSL FHDRVVHDYS HTSEQVIVVY ISSAAGDNSW LHQWFKPGNL SDEERENILW 60
61 VRLVNGT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.566 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.377 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.344 | d.68.7 | R3H domain |
| View | Download | 0.295 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.285 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.276 | a.4.1 | Homeodomain-like |
| View | Download | 0.264 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.260 | c.47.1 | Thioredoxin-like |
| View | Download | 0.260 | d.12.1 | Ribosomal proteins L23 and L15e |
| View | Download | 0.260 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.258 | a.74.1 | Cyclin-like |
| View | Download | 0.256 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.245 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.237 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.231 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.214 | d.68.4 | YhbY-like |
| View | Download | 0.208 | d.58.5 | GlnB-like |
| View | Download | 0.204 | a.60.2 | RuvA domain 2-like |
|
Region A: Residues: [68-184] |
1 11 21 31 41 51
| | | | | |
1 KECLLFKSIF PSSSAPSINI LQNGLLECSI QGNSLSREQD PWETFINGLQ SVFKGQVTKR 60
61 KLFSKSNEEY QRVKRMIQND KLERKYVFQN TNDPQRKPQK WKQLTVTDNV SYKSQKG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.420 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.361 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.317 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.310 | N/A | N/A | a.130.1 | Chorismate mutase II |
| View | Download | 0.284 | N/A | N/A | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.280 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.262 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.234 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.230 | N/A | N/A | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.221 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.209 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
|
Region A: Residues: [185-302] |
1 11 21 31 41 51
| | | | | |
1 FLAQNYCTLQ LKLPNGYTIS NTFPPQTKLH KVRMWLDYNC YDDGTPYLFH RNIPRVTLTR 60
61 NDELKSLQEL DLLPRSTLIL EPLEANNKTF DYMEQSSLLH KVYSGLTSFW AKEPEVDA
|
| Detection Method: | |
| Confidence: | 17.69897 |
| Match: | 1h8cA_ |
| Description: | Fas-assosiated factor 1, Faf1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [303-396] |
1 11 21 31 41 51
| | | | | |
1 SSSRLGYQRL GTNVSNSANY SLQKLSSLDM VSDGGGGGGG DSMTPSAYTT PRMYPSNGTS 60
61 QLRQNVSELN LSSNNSASNT KVRTLGYSNN NGNN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.271 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.233 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.202 | d.26.1 | FKBP-like |
