| Protein: | RPN10 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 268 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPN10.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-91 | [1..236] | [1..224] |
|
|
4.0E-90 | [1..236] | [1..224] |
|
|
3.0E-86 | [1..236] | [1..224] |
|
|
3.0E-86 | [1..236] | [1..224] |
|
Region A: Residues: [1-197] |
1 11 21 31 41 51
| | | | | |
1 MVLEATVLVI DNSEYSRNGD FPRTRFEAQI DSVEFIFQAK RNSNPENTVG LISGAGANPR 60
61 VLSTFTAEFG KILAGLHDTQ IEGKLHMATA LQIAQLTLKH RQNKVQHQRI VAFVCSPISD 120
121 SRDELIRLAK TLKKNNVAVD IINFGEIEQN TELLDEFIAA VNNPQEETSH LLTVTPGPRL 180
181 LYENIASSPI ILEEGSS
|
| Detection Method: |  |
| Confidence: | 15.0 |
| Match: | 1dgqA |
| Description: | Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.02098822555334 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.82496592594463 | bayes_pls_golite062009 |
| endopeptidase activity | 3.72596563304893 | bayes_pls_golite062009 |
| binding | 3.32950434867692 | bayes_pls_golite062009 |
| hydrolase activity | 2.72944528058473 | bayes_pls_golite062009 |
| protein binding | 1.4332924081006 | bayes_pls_golite062009 |
| nucleic acid binding | 1.41389987484225 | bayes_pls_golite062009 |
| DNA binding | 1.27751137443334 | bayes_pls_golite062009 |
| protein dimerization activity | 0.45109468643752 | bayes_pls_golite062009 |
| protein complex binding | 0.0341925447010603 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.0195372592716698 | bayes_pls_golite062009 |
|
Region A: Residues: [198-268] |
1 11 21 31 41 51
| | | | | |
1 GMGAFGGSGG DSDANGTFMD FGVDPSMDPE LAMALRLSME EEQQRQERLR QQQQQQDQPE 60
61 QSEQPEQHQD K
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.330 | a.22.1 | Histone-fold |
| View | Download | 0.326 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.314 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.390 | a.126.1 | Serum albumin-like |
| View | Download | 0.291 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.287 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.286 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.273 | a.64.1 | Saposin |
| View | Download | 0.256 | a.22.1 | Histone-fold |
| View | Download | 0.239 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.203 | a.105.1 | FIS-like |
