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View Structure Prediction Details

Protein: TRA1
Organism: Saccharomyces cerevisiae
Length: 3744 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

No multiple sequence alignment data found for TRA1.

Predicted Domain #1
Region A:
Residues: [1-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTEQIEQF ASRFRDDDAT LQSRYSTLSE LYDIMELLNS PEDYHFFLQA VIPLLLNQLK  60
   61 EVPISYDAHS PEQKLRNSML DIFNRCLMNQ TFQPYAMEVL EFLLSVLPKE NEENGILCMK 120
  121 VLTTLFKSFK SILQDKLDSF IRIIIQIYKN TPNLINQTFY EAGKAEQGDL DSPKEPQADE 180
  181 LLDEFSKNDE EKDFPSKQSS TEPRFENSTS SNGLRSSMFS FKILSECPIT MVTLYSSYKQ 240
  241 LTSTSLPEFT PLIMNLLNIQ IKQQQEAREQ AESRGEHFTS ISTEIINRPA YCDFILAQIK 300
  301 ATSFLAYVFI RGYAPEFLQD YVNFVPDLII RLLQDCPSEL SSARKELLHA TRHILSTNYK 360
  361 KLFLPKLDYL FDERILIGNG FTMHETLRPL AYSTVADFIH NIRSELQLSE IEKTIKIYTG 420
  421 YLLDESLALT VQIMSAKLLL NLVERILKLG KENPQEAPRA KKLLMIIIDS YMNRFKTLNR 480
  481 QYDTIMKYYG RYETHKKEKA EKLKNSIQDN DKESEEFMRK VL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [523-1347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPSDDDHLMP QPKKEDINDS PDVEMTESDK VVKNDVEMFD IKNYAPILLL PTPTNDPIKD  60
   61 AFYLYRTLMS FLKTIIHDLK VFNPPPNEYT VANPKLWASV SRVFSYEEVI VFKDLFHECI 120
  121 IGLKFFKDHN EKLSPETTKK HFDISMPSLP VSATKDAREL MDYLAFMFMQ MDNATFNEII 180
  181 EQELPFVYER MLEDSGLLHV AQSFLTSEIT SPNFAGILLR FLKGKLKDLG NVDFNTSNVL 240
  241 IRLFKLSFMS VNLFPNINEV VLLPHLNDLI LNSLKYSTTA EEPLVYFYLI RTLFRSIGGG 300
  301 RFENLYRSIK PILQVLLQSL NQMILTARLP HERELYVELC ITVPVRLSVL APYLPFLMKP 360
  361 LVFALQQYPD LVSQGLRTLE LCIDNLTAEY FDPIIEPVID DVSKALFNLL QPQPFNHAIS 420
  421 HNVVRILGKL GGRNRQFLKP PTDLTEKTEL DIDAIADFKI NGMPEDVPLS VTPGIQSALN 480
  481 ILQSYKSDIH YRKSAYKYLT CVLLLMTKSS AEFPTNYTEL LKTAVNSIKL ERIGIEKNFD 540
  541 LEPTVNKRDY SNQENLFLRL LESVFYATSI KELKDDAMDL LNNLLDHFCL LQVNTTLLNK 600
  601 RNYNGTFNID LKNPNFMLDS SLILDAIPFA LSYYIPEVRE VGVLAYKRIY EKSCLIYGEE 660
  661 LALSHSFIPE LAKQFIHLCY DETYYNKRGG VLGIKVLIDN VKSSSVFLKK YQYNLANGLL 720
  721 FVLKDTQSEA PSAITDSAEK LLIDLLSITF ADVKEEDLGN KVLENTLTDI VCELSNANPK 780
  781 VRNACQKSLH TISNLTGIPI VKLMDHSKQF LLSPIFAKPL RALPF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [1348-2109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMQIGNVDAI TFCLSLPNTF LTFNEELFRL LQESIVLADA EDESLSTNIQ KTTEYSTSEQ  60
   61 LVQLRIACIK LLAIALKNEE FATAQQGNIR IRILAVFFKT MLKTSPEIIN TTYEALKGSL 120
  121 AENSKLPKEL LQNGLKPLLM NLSDHQKLTV PGLDALSKLL ELLIAYFKVE IGRKLLDHLT 180
  181 AWCRVEVLDT LFGQDLAEQM PTKIIVSIIN IFHLLPPQAD MFLNDLLLKV MLLERKLRLQ 240
  241 LDSPFRTPLA RYLNRFHNPV TEYFKKNMTL RQLVLFMCNI VQRPEAKELA EDFEKELDNF 300
  301 YDFYISNIPK NQVRVVSFFT NMVDLFNTMV ITNGDEWLKK KGNMILKLKD MLNLTLKTIK 360
  361 ENSFYIDHLQ LNQSIAKFQA LYLRFTELSE RDQNPLLLDF IDFSFSNGIK ASYSLKKFIF 420
  421 HNIIASSNKE KQNNFINDAT LFVLSDKCLD ARIFVLKNVI NSTLIYEVAT SGSLKSYLVE 480
  481 DKKPKWLELL HNKIWKNSNA ILAYDVLDHH DLFRFELLQL SAIFIKADPE IIAEIKKDII 540
  541 KFCWNFIKLE DTLIKQSAYL VTSYFISKFD FPIKVVTQVF VALLRSSHVE ARYLVKQSLD 600
  601 VLTPVLHERM NAAGTPDTWI NWVKRVMVEN SSSQNNILYQ FLISHPDLFF NSRDLFISNI 660
  661 IHHMNKITFM SNSNSDSHTL AIDLASLILY WENKTLEITN VNNTKTDSDG DVVMSDSKSD 720
  721 INPVEADTTA IIVDANNNSP ISLHLREACT AFLIRYVCAS NH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [2110-2411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAIETELGLR AINILSELIS DKHWTNVNVK LVYFEKFLIF QDLDSENILY YCMNALDVLY  60
   61 VFFKNKTKEW IMENLPTIQN LLEKCIKSDH HDVQEALQKV LQVIMKAIKA QGVSVIIEEE 120
  121 SPGKTFIQML TSVITQDLQE TSSVTAGVTL AWVLFMNFPD NIVPLLTPLM KTFSKLCKDH 180
  181 LSISQPKDAM ALEEARITTK LLEKVLYILS LKVSLLGDSR RPFLSTVALL IDHSMDQNFL 240
  241 RKIVNMSRSW IFNTEIFPTV KEKAAILTKM LAFEIRGEPS LSKLFYEIVL KLFDQEHFNN 300
  301 TE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [2412-2597]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITVRMEQPFL VGTRVEDIGI RKRFMTILDN SLERDIKERL YYVIRDQNWE FIADYPWLNQ  60
   61 ALQLLYGSFN REKELSLKNI YCLSPPSILQ EYLPENAEMV TEVNDLELSN FVKGHIASMQ 120
  121 GLCRIISSDF IDSLIEIFYQ DPKAIHRAWV TLFPQVYKSI PKNEKYGFVR SIITLLSKPY 180
  181 HTRQIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [2598-3193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRTNVINMLL DSISKIESLE LPPHLVKYLA ISYNAWYQSI NILESIQSNT SIDNTKIIEA  60
   61 NEDALLELYV NLQEEDMFYG LWRRRAKYTE TNIGLSYEQI GLWDKAQQLY EVAQVKARSG 120
  121 ALPYSQSEYA LWEDNWIQCA EKLQHWDVLT ELAKHEGFTD LLLECGWRVA DWNSDRDALE 180
  181 QSVKSVMDVP TPRRQMFKTF LALQNFAESR KGDQEVRKLC DEGIQLSLIK WVSLPIRYTP 240
  241 AHKWLLHGFQ QYMEFLEATQ IYANLHTTTV QNLDSKAQEI KRILQAWRDR LPNTWDDVNM 300
  301 WNDLVTWRQH AFQVINNAYL PLIPALQQSN SNSNINTHAY RGYHEIAWVI NRFAHVARKH 360
  361 NMPDVCISQL ARIYTLPNIE IQEAFLKLRE QAKCHYQNMN ELTTGLDVIS NTNLVYFGTV 420
  421 QKAEFFTLKG MFLSKLRAYE EANQAFATAV QIDLNLAKAW AQWGFFNDRR LSEEPNNISF 480
  481 ASNAISCYLQ AAGLYKNSKI RELLCRILWL ISIDDASGML TNAFDSFRGE IPVWYWITFI 540
  541 PQLLTSLSHK EANMVRHILI RIAKSYPQAL HFQLRTTKED FAVIQRQTMA VMGDKP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 204.744727
Match: PF02259
Description: FAT domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [3194-3315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTNDRNGRRQ PWEYLQELNN ILKTAYPLLA LSLESLVAQI NDRFKSTTDE DLFRLINVLL  60
   61 IDGTLNYNRL PFPRKNPKLP ENTEKNLVKF STTLLAPYIR PKFNADFIDN KPDYETYIKR 120
  121 LR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.0
Match: 1he8A
Description: Phoshoinositide 3-kinase (PI3K) helical domain; Phoshoinositide 3-kinase (PI3K); Phoshoinositide 3-kinase (PI3K), catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #8
Region A:
Residues: [3316-3420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YWRRRLENKL DRASKKENLE VLCPHLSNFH HQKFEDIEIP GQYLLNKDNN VHFIKIARFL  60
   61 PTVDFVRGTH SSYRRLMIRG HDGSVHSFAV QYPAVRHSRR EERMF

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [3446-3461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIAIPLSPQV RIMNDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.0
Match: 1he8A
Description: Phoshoinositide 3-kinase (PI3K) helical domain; Phoshoinositide 3-kinase (PI3K); Phoshoinositide 3-kinase (PI3K), catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #9
Region A:
Residues: [3421-3445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLYRLFNKSL SKNVETRRRS IQFNL

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [3462-3708]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSFTTLHEIH NEFCKKKGFD PDDIQDFMAD KLNAAHDDAL PAPDMTILKV EIFNSIQTMF  60
   61 VPSNVLKDHF TSLFTQFEDF WLFRKQFASQ YSSFVFMSYM MMINNRTPHK IHVDKTSGNV 120
  121 FTLEMLPSRF PYERVKPLLK NHDLSLPPDS PIFHNNEPVP FRLTPNIQSL IGDSALEGIF 180
  181 AVNLFTISRA LIEPDNELNT YLALFIRDEI ISWFSNLHRP IIENPQLREM VQTNVDLIIR 240
  241 KVAQLGH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.0
Match: 1he8A
Description: Phoshoinositide 3-kinase (PI3K) helical domain; Phoshoinositide 3-kinase (PI3K); Phoshoinositide 3-kinase (PI3K), catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #10
Region A:
Residues: [3709-3744]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNSTPTVTTQ FILDCIGSAV SPRNLARTDV NFMPWF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 11.79588
Match: PF02260
Description: FATC domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle