YRC Public Data Repository - Protein Structure Prediction

Protein:	NOP10
Organism:	Saccharomyces cerevisiae
Length:	58 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP10.

Description	E-value	Query Range	Subject Range
NOP10_MOUSE - H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus GN=Nop10 PE=3 SV=1 gi\|149022902, gi... - gi\|186910255\|ref\|NP_001119572.1\| nucleolar protein family A, member 3 [Rattus norvegicus], gi\|149022... NOP10 - NOP10 ribonucleoprotein homolog (yeast) gi\|114656176, gi... - gi\|114656176\|ref\|XP_001165865.1\| PREDICTED: nucleolar protein family A, member 3 isoform 2 [Pan trog...	6.0E-20	[1..58]	[1..58]
CE27803 - status:Confirmed UniProt:Q9XVR8 protein_id:CAB02768.2	4.0E-19	[1..58]	[1..58]
NOP10_YEAST - H/ACA ribonucleoprotein complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... NOP10 - Constituent of small nucleolar ribonucleoprotein particles containing H/ACA-type snoRNAs, which are ... gi\|151944017 - gi\|151944017\|gb\|EDN62310.1\| H/ACA-box snoRNPs component [Saccharomyces cerevisiae YJM789] gi\|190405854 - gi\|190405854\|gb\|EDV09121.1\| H/ACA-box snoRNPs component [Saccharomyces cerevisiae RM11-1a]	4.0E-18	[1..58]	[1..58]
CG7637-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7637 (CG7637, FBgn0033548). It is a protein... gi\|195333227, gi... - gi\|195333227\|ref\|XP_002033293.1\| GM20494 [Drosophila sechellia], gi\|194125263\|gb\|EDW47306.1\| GM20494... gi\|190659358, gi... - gi\|194884175\|ref\|XP_001976171.1\| GG22719 [Drosophila erecta], gi\|190659358\|gb\|EDV56571.1\| GG22719 [D... gi\|220951258, gi... - gi\|220959964\|gb\|ACL92525.1\| CG7637-PA [synthetic construct], gi\|220951258\|gb\|ACL88172.1\| CG7637-PA [... gi\|195582268, gi... - gi\|195582268\|ref\|XP_002080950.1\| GD25957 [Drosophila simulans], gi\|194192959\|gb\|EDX06535.1\| GD25957 ... gi\|195483637, gi... - gi\|195483637\|ref\|XP_002090369.1\| GE13075 [Drosophila yakuba], gi\|194176470\|gb\|EDW90081.1\| GE13075 [D... gi\|194145371, gi... - gi\|195383720\|ref\|XP_002050574.1\| GJ20125 [Drosophila virilis], gi\|194145371\|gb\|EDW61767.1\| GJ20125 [...	5.0E-18	[1..58]	[1..58]
NOP10_ARATH - H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana GN=At2g20490 PE=2 SV=...	7.0E-18	[1..58]	[1..58]
NOP10_SCHPO - H/ACA ribonucleoprotein complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=... nop10 - small nucleolar ribonucleoprotein Nop10	2.0E-17	[1..58]	[1..58]
NOP10_SULSO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus GN=SSO7115 PE=3 SV=1, (Q97Z78) Ribosome... NOP10_SULSO - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 113...	7.0E-11	[12..54]	[11..54]
NOP10_SULTO - Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140... NOP10_SULTO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii GN=ST0940.1 PE=3 SV=1, (Q973G1) Ribosome bi...	2.0E-10	[15..54]	[14..54]
gi\|14591746 - gi\|14591746\|ref\|NP_142880.1\| H/ACA RNA-protein complex component Nop10p [Pyrococcus horikoshii OT3]	3.0E-9	[15..52]	[14..52]

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Predicted Domain #1

Region A:
Residues: [1-58]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLMYTLGPD GKRIYTLKKV TESGEITKSA HPARFSPDDK YSRQRVTLKK RFGLVPGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.829	d.9.2	Description not found.

Predicted functions:

Term	Confidence	Notes
RNA binding	3.61380698450754	bayes_pls_golite062009
nucleic acid binding	2.36306971710899	bayes_pls_golite062009
binding	2.07200237133183	bayes_pls_golite062009
protein binding	0.377070376016177	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: