YRC Public Data Repository - Protein Structure Prediction

Protein:	SSF1
Organism:	Saccharomyces cerevisiae
Length:	453 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSF1.

Description	E-value	Query Range	Subject Range
SSF1 - Constituent of 66S pre-ribosomal particles, required for ribosomal large subunit maturation; functio... gi\|151944010 - gi\|151944010\|gb\|EDN62303.1\| suppressor of swi4 (four) [Saccharomyces cerevisiae YJM789] SSF1_YEAST - Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF1 PE...	0.0	[1..453]	[1..453]
gi\|119604482, gi... - gi\|99028871\|ref\|NP_001035754.1\| PPAN-P2RY11 protein [Homo sapiens], gi\|119604482\|gb\|EAW84076.1\| hCG2... gi\|189442454 - gi\|189442454\|gb\|AAI67833.1\| PPAN-P2RY11 readthrough transcript [synthetic construct]	0.0	[2..453]	[7..407]
SSF1_MOUSE - Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=1	0.0	[2..450]	[7..403]
gi\|19309666 - gi\|19309666\|emb\|CAB11063.2\| SPAC1B9.03c [Schizosaccharomyces pombe]	0.0	[16..428]	[2..372]
gi\|7492705, gi\|1... - gi\|7492705\|pir\|\|T39008 probable mating protein - fission yeast (Schizosaccharomyces pombe), gi\|19114... gi\|19114668 - gi\|19114668\|ref\|NP_593756.1\| hypothetical protein SPAC6B12.01 [Schizosaccharomyces pombe 972h-]	0.0	[26..428]	[1..361]
gi\|4323640 - gi\|4323640\|gb\|AAD16459.1\| Peter Pan [Drosophila melanogaster]	0.0	[3..423]	[6..361]
gi\|10176870, gi\|... - gi\|42573760\|ref\|NP_974976.1\| PPAN (PETER PAN-LIKE PROTEIN) [Arabidopsis thaliana], gi\|30697573\|ref\|N...	3.0E-99	[1..357]	[17..304]
CE18484 - WBGene00007125 status:Predicted TR:Q9XVF3 protein_id:CAB03796.1	4.0E-14	[385..452]	[54..118]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRRQKKRT HAQLTPEQEQ GIPKSMVIRV GQTSLANHSL NQLVKDFRQI MQPHTAIKLK  60
   61 ERKSNKLKDF VVMCGPLGVT HLFMFTQSEK TGNVSLKIAR TPQGPTVTFQ VLDYSLGRDI 120
  121 KKFLKRPKSL NNDDVLNPPL LVLNGFSTSK RSGEDDQDVN VEKVIVSMFQ NIFPPLNPAR 180
  181 TSLNSIKRVF MINKDRETGE ISMRHYFIDI REVEISRNLK RLYKAKNNLS KTVPNLHRKE 240
  241 DISSLILDHD LGAYTSESEI EDDAIVRVVD NQDVKAKHSQ SLKSQRTPVE KKDN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	172.79588
Match:	PF03877
Description:	No description for PF03877 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	1.74559657602427	bayes_pls_golite062009
protein binding	0.360840654168616	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [295-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEREKETEEE DVEMEEPKPS ENLQPTPRKK AIKLTELGPR LTLKLVKIEE GICSGKVLHH  60
   61 EFVQKSSEEI KALEKRHA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.820	0.148	rRNA binding	d.50.1	dsRNA-binding domain-like

Predicted Domain #3

Region A:
Residues: [373-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKMRLKEQRK KEQEENIAKK KAVKDAKKQR KLERRKARAA EGGEGQGKDD AMSDDESSSS  60
   61 DSEHYGSVPE DLDSDLFSEV E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: