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View Structure Prediction Details

Protein: MRPL9
Organism: Saccharomyces cerevisiae
Length: 269 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL9.

Description E-value Query
Range		 Subject
Range
gi|190406772 - gi|190406772|gb|EDV10039.1| 60S ribosomal protein L9, mitochondrial precursor [Saccharomyces cerevis...
gi|207344963 - gi|207344963|gb|EDZ71935.1| YGR220Cp-like protein [Saccharomyces cerevisiae AWRI1631]
RM09_YEAST - 54S ribosomal protein L9, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...
gi|151943496 - gi|151943496|gb|EDN61807.1| YmL9 [Saccharomyces cerevisiae YJM789]
MRPL9 - Mitochondrial ribosomal protein of the large subunit
 4.0E-86 [1..269] [1..269]
gi|14250148 - gi|14250148|gb|AAH08492.1| Ribosomal protein L3 [Homo sapiens]
 1.0E-76 [16..267] [3..352]
gi|57698 - gi|57698|emb|CAA44095.1| ribosomal protein L3 [Rattus rattus]
RL3_RAT - 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3
 7.0E-76 [16..267] [3..352]
gi|55716022 - gb|AAH86257.1| Unknown (protein for MGC:98779) [Xenopus laevis]
RL3_MOUSE - 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=1 SV=3
 2.0E-75 [16..267] [3..352]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 2.0E-74 [19..267] [1..347]
gi|7159574 - gi|7159574|emb|CAB76199.1| ribosomal protein L3 [Bos taurus]
 4.0E-74 [16..267] [3..352]

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Predicted Domain #1
Region A:
Residues: [1-87] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFLQGSIF SISKLHVRYS STRPFLVAPS IANSITTEAP AINHSPELAN ARKWLPKRCG  60
   61 LITRKKGMMP YFDKSTGERS AATILEV

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [155-175] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKPSFFKEGQ YVDVRSVSKG K

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [225-269] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNEHVTIQNV KVLKVDDENN VIWVKGSVAG PKNSFVKIQD AIKKT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 377.927757
Match: 1lnrB_
Description: No description for 1lnrB_ was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 8.74976995123472 bayes_pls_golite062009
structural molecule activity 8.17182185344538 bayes_pls_golite062009
peptidyltransferase activity 3.0445946370998 bayes_pls_golite062009
translation initiation factor activity 2.68619850021832 bayes_pls_golite062009
translation regulator activity 2.20347076721097 bayes_pls_golite062009
translation factor activity, nucleic acid binding 2.18748808024313 bayes_pls_golite062009
nucleic acid binding 1.81199659576461 bayes_pls_golite062009
binding 1.44145316612405 bayes_pls_golite062009
RNA binding 0.798696391797967 bayes_pls_golite062009
protein binding 0.449435758237719 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [88-154] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNVEVIMHRT SEVNGYFACQ VGYGSRHLSK VSRQMLGHFA SKVVNPKEHV AEFRVKDEKG  60
   61 LIPPGTL

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [176-224] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFTGVMKRYG FKGLRASHGT SIMHRHGGSY GQNQDPGRVL PGRKMPGHM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 377.927757
Match: 1lnrB_
Description: No description for 1lnrB_ was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle