| Protein: | ROM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1155 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROM1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1155] | [1..1155] |
|
|
0.0 | [18..1155] | [64..1224] |
|
|
0.0 | [17..1146] | [121..1307] |
|
|
4.0E-96 | [68..877] | [60..838] |
|
|
3.0E-91 | [366..869] | [105..548] |
|
Region A: Residues: [1-268] |
1 11 21 31 41 51
| | | | | |
1 MNSNELDLRN KYFYEIFGKK RKSDTSTPTQ LFSGSKVQTN INEISITNDE DEDSTEDENK 60
61 ASLKDYTLGH DTGARYRIAP DCSSHQLKAS PVLHISTNLN SSPQSFTGDQ ISPTNKKISI 120
121 NDSTRQDKGN SCTTTSSPSQ KRSNVLLPHV RKHSSPSLLS FSKNSGSHMG DPNQLSTPPT 180
181 PKSAGHTMEL HSSFNGKHSS SSTSSLFALE SLKTQNRRSS NSSNHSSQYR RHTNQHQRHH 240
241 SRSKSSPVSL TEISMIKGTP LVYPALLS
|
| Detection Method: |  |
| Confidence: | 12.1 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [269-400] |
1 11 21 31 41 51
| | | | | |
1 LIAIKFKQTI KLSTHKKMGL LYRDSFTGKQ AIDTLCLIIG SLDRNLGMLI GKSLEAQKLF 60
61 HDVLYDHGVR DSVLEIYELS SESIFMAHQS QSSTSIANTF SSSSSSVNSL RTKTEIYGVF 120
121 VPLTHCYSST CS
|
| Detection Method: | |
| Confidence: | 16.721246 |
| Match: | PF00610 |
| Description: | Domain found in Dishevelled, Egl-10, and Pleckstrin |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [401-455] |
1 11 21 31 41 51
| | | | | |
1 LEKLCYSISC PNRLQQQANL HLKLGGGLKR NISLALDKED DERISWTNSV PKSVW
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.73671056234733 | bayes_pls_golite062009 |
| transcription regulator activity | 2.39919853201545 | bayes_pls_golite062009 |
| DNA binding | 2.16143325457938 | bayes_pls_golite062009 |
| nucleic acid binding | 2.09113880936999 | bayes_pls_golite062009 |
| transcription factor activity | 1.54168457775536 | bayes_pls_golite062009 |
| protein binding | 0.726445167461826 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.287205124844904 | bayes_pls_golite062009 |
| transcription activator activity | 0.125095059983242 | bayes_pls_golite062009 |
| transcription repressor activity | 0.0268276479020184 | bayes_pls_golite062009 |
|
Region A: Residues: [456-654] |
1 11 21 31 41 51
| | | | | |
1 ESLSKQQIKR QEAIYELFTT EKKFVKSLEI IRDTFMKKLL ETNIIPSDVR INFVKHVFAH 60
61 INEIYSVNRE FLKALAQRQS LSPICPGIAD IFLQYLPFFD PFLSYIASRP YAKYLIETQR 120
121 SVNPNFARFD DEVSNSSLRH GIDSFLSQGV SRPGRYSLLV REIIHFSDPV TDKDDLQMLM 180
181 KVQDLLKDLM KRIDRASGA
|
| Detection Method: | |
| Confidence: | 160.927757 |
| Match: | 1ki1B_ |
| Description: | GEF of intersectin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [655-839] |
1 11 21 31 41 51
| | | | | |
1 AQDRYDVKVL KQKILFKNEY VNLGLNNEKR KIKHEGLLSR KDVNKTDASF SGDIQFYLLD 60
61 NMLLFLKSKA VNKWHQHTVF QRPIPLPLLF ICPAEDMPPI KRYVTENPNC SAGVLLPQYQ 120
121 TSNPKNAIVF AYYGTKQQYQ VTLYAPQPAG LQTLIEKVKQ EQKRLLDETK HITFKQMVGQ 180
181 FFHSY
|
| Detection Method: | |
| Confidence: | 160.927757 |
| Match: | 1ki1B_ |
| Description: | GEF of intersectin |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.74397599086046 | bayes_pls_golite062009 |
| protein binding | 1.14503622489775 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.628909211572624 | bayes_pls_golite062009 |
| actin binding | 0.451110433048089 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.149708921127291 | bayes_pls_golite062009 |
|
Region A: Residues: [840-1155] |
1 11 21 31 41 51
| | | | | |
1 INTNRVNDVL ICHAGKILLV ATNMGLFVLN YATSINQKPV HLLHKISISQ ISVLEEYKVM 60
61 ILLIDKKLYG CPLDVIDDAE NADFLFRKNS KVLFKYVAMF KDGFCNGKRI IMIAHHFLHA 120
121 AQLLIVNPLI FDFNSGNFKK NLKAGLVDFS VDSEPLSFSF LENKICIGCK KNIKILNVPE 180
181 VCDKNGFKMR ELLNLHDNKV LANMYKETFK VVSMFPIKNS TFACFPELCF FLNKQGKREE 240
241 TKGCFHWEGE PEQFACSYPY IVAINSNFIE IRHIENGELV RCVLGNKIRM LKSYAKKILY 300
301 CYEDPQGFEI IELLNF
|
| Detection Method: | |
| Confidence: | 89.60206 |
| Match: | PF00780 |
| Description: | CNH domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
