| Protein: | RSM23 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 488 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM23.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..488] | [1..488] |
|
|
0.0 | [83..479] | [9..384] |
|
|
0.0 | [84..479] | [11..391] |
|
|
0.0 | [84..430] | [11..340] |
|
|
4.0E-97 | [83..481] | [8..387] |
|
|
2.0E-92 | [125..478] | [132..467] |
|
|
1.0E-88 | [113..369] | [118..397] |
|
Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MYKNIYICIL YIYINFYTSR ENINKRTSTS HVVIRIRIML RMSTSRFIGQ RLFTTARSLQ 60
61 AAKPAPKGKT QGFSKKSSSV SSYSSAKRVT PGSLYKNWTN TTHTAQLQQT AV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [113-398] |
1 11 21 31 41 51
| | | | | |
1 PLALPIFNFD DISKTLNKVV SYSNKQYKSL HHLGSFKKSQ FNELFQKPVC LVREDATNSF 60
61 LKKLVSHPVK KFIITGEPGV GKTVLLSQAH AYAVDSKQII INISYPELFL NGRNDFSYDD 120
121 DLKLFIQPMY LKKLIRKILK ANDPALLKSI ELSKDYKFSN ANPKNASVKP FVTLNKTKNT 180
181 VLDLLSVMTH PHNRGKLMKA IIDELSVQSK VPIMFTVDNF SKVLTTAYSA YRNTENKQIY 240
241 SLDLQMGKLM MDIISGETKF ANGESSTILA ISGVDRTNKT LPVALG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [399-488] |
1 11 21 31 41 51
| | | | | |
1 KIPVDPYVTR YHYEPKFVEL LQKGNVTEFE VPKLNKQEVN ELIDYYKQSN VLLDKDITGK 60
61 KWENLIDEKY FLSGNGNPRE LLKSLVLSHR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| structural constituent of ribosome | 5.42139550243577 | bayes_pls_golite062009 |
| structural molecule activity | 4.52418150951371 | bayes_pls_golite062009 |
| binding | 2.00435458244286 | bayes_pls_golite062009 |
| catalytic activity | 0.942640875796745 | bayes_pls_golite062009 |
| motor activity | 0.934327429601554 | bayes_pls_golite062009 |
| nucleic acid binding | 0.88509145478589 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.482433345604081 | bayes_pls_golite062009 |
| protein binding | 0.409258528033042 | bayes_pls_golite062009 |
| microtubule motor activity | 0.381564091226657 | bayes_pls_golite062009 |
| DNA binding | 0.368768953337555 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.354154818458687 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.35085688811866 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.350844329183388 | bayes_pls_golite062009 |
| nucleotide binding | 0.350227693353399 | bayes_pls_golite062009 |
| transcription regulator activity | 0.181434122054025 | bayes_pls_golite062009 |
| translation regulator activity | 0.165004576559811 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.144513585153713 | bayes_pls_golite062009 |
| RNA binding | 0.10404338295854 | bayes_pls_golite062009 |
