| Protein: | PTR3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 678 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTR3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..678] | [1..678] |
|
Region A: Residues: [1-678] |
1 11 21 31 41 51
| | | | | |
1 MHSHRQKWGR QTDIARVLDD IEHDLYLPQR LSLDGATGTD ESHVQYGIVK DCSVLTCGCC 60
61 ISESLFNDLC RETSNKQTAC PICQRENVRL LSAIKPLRDL ARQIDFFRST TGQGESESDE 120
121 LPAIVKTSPS SSSLSLTPSR SSSTAGLEAD NKTLSDPTVK EKSSLLELFH IVASKMHNAN 180
181 TEVGSDHPLT TGTTRDQEEH TTKENYSSSL LEPNYDDHAN WKILDNASNT RTVPIDNNFS 240
241 LMSTDVTIPS TANYQTNSAH DLDEEKEYFF ANCFPMYRKK FQFNTHPKFL GTKSKLFINQ 300
301 SISPDCTKFA LITEHKWEIY SINPKDNSPQ LVSCGKSSGE YGPNFNQLTE QSSSSLSTTS 360
361 QASKKKKKNW SQRFCKLSND FLIISGSQNI LNVHDIHQNG KLIYTYVSRF PIRCIDIDPR 420
421 SQIIAYGITG KDRHTGAEQA LVVIQQITRN KVTLEPEFPP PITITLPYRD PINTIQLSHD 480
481 AKYLTCSTAL ESRFLIISLQ KINEPRLIMK SVRSIDTSLE SEGITDTKLF PGNPNLMCIT 540
541 STAFNSSPLV INTKITQING VRTVAQPSML IRVDEIGCKI HKCEISPRND AIAFLDRNGS 600
601 VYIMCAPTMM DNNEKRRTIL VETVANAYRA YESATLRFNP EGNKLYILDR KGTFFVEDFA 660
661 YGLPQSREIT KCKQIFHK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.51534322183238 | bayes_pls_golite062009 |
| protein binding | 1.2335781397975 | bayes_pls_golite062009 |
|
Region A: Residues: [147-219] |
1 11 21 31 41 51
| | | | | |
1 LEADNKTLSD PTVKEKSSLL ELFHIVASKM HNANTEVGSD HPLTTGTTRD QEEHTTKENY 60
61 SSSLLEPNYD DHA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [220-678] |
1 11 21 31 41 51
| | | | | |
1 NWKILDNASN TRTVPIDNNF SLMSTDVTIP STANYQTNSA HDLDEEKEYF FANCFPMYRK 60
61 KFQFNTHPKF LGTKSKLFIN QSISPDCTKF ALITEHKWEI YSINPKDNSP QLVSCGKSSG 120
121 EYGPNFNQLT EQSSSSLSTT SQASKKKKKN WSQRFCKLSN DFLIISGSQN ILNVHDIHQN 180
181 GKLIYTYVSR FPIRCIDIDP RSQIIAYGIT GKDRHTGAEQ ALVVIQQITR NKVTLEPEFP 240
241 PPITITLPYR DPINTIQLSH DAKYLTCSTA LESRFLIISL QKINEPRLIM KSVRSIDTSL 300
301 ESEGITDTKL FPGNPNLMCI TSTAFNSSPL VINTKITQIN GVRTVAQPSM LIRVDEIGCK 360
361 IHKCEISPRN DAIAFLDRNG SVYIMCAPTM MDNNEKRRTI LVETVANAYR AYESATLRFN 420
421 PEGNKLYILD RKGTFFVEDF AYGLPQSREI TKCKQIFHK
|
| Detection Method: | |
| Confidence: | 1.03 |
| Match: | 1aofA |
| Description: | N-terminal (heme c) domain of cytochrome cd1-nitrite reductase; C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.17860304426104 | bayes_pls_golite062009 |
| protein binding | 0.0481598093678061 | bayes_pls_golite062009 |
| electron carrier activity | 0.0445811956513282 | bayes_pls_golite062009 |
