| Protein: | GAT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 510 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAT1.
| Description | E-value | Query Range |
Subject Range |
|
|
225.0 | [0..11] | [498..603] |
|
|
208.0 | [0..24] | [498..669] |
|
|
185.0 | [0..70] | [434..1419] |
|
|
178.0 | [0..70] | [434..1497] |
|
|
174.0 | [0..17] | [441..32] |
|
|
174.0 | [0..17] | [441..32] |
|
|
173.0 | [0..34] | [496..47] |
|
|
171.0 | [0..46] | [496..39] |
|
Region A: Residues: [1-238] |
1 11 21 31 41 51
| | | | | |
1 MHVFFPLLFR PSPVLFIACA YIYIDIYIHC TRCTVVNITM STNRVPNLDP DLNLNKEIWD 60
61 LYSSAQKILP DSNRILNLSW RLHNRTSFHR INRIMQHSNS IMDFSASPFA SGVNAAGPGN 120
121 NDLDDTDTDN QQFFLSDMNL NGSSVFENVF DDDDDDDDVE THSIVHSDLL NDMDSASQRA 180
181 SHNASGFPNF LDTSCSSSFD DHFIFTNNLP FLNNNSINNN HSHNSSHNNN SPSIANNT
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [239-296] |
1 11 21 31 41 51
| | | | | |
1 NANTNTNTSA STNTNSPLLR RNPSPSIVKP GSRRNSSVRK KKPALKKIKS STSVQSSA
|
| Detection Method: | |
| Confidence: | 91.9897 |
| Match: | 1gnfA |
| Description: | SOLUTION STRUCTURE OF THE N-TERMINAL ZINC FINGER OF MURINE GATA-1, NMR, 25 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [297-404] |
1 11 21 31 41 51
| | | | | |
1 TPPSNTSSNP DIKCSNCTTS TTPLWRKDPK GLPLCNACGL FLKLHGVTRP LSLKTDIIKK 60
61 RQRSSTKINN NITPPPSSSL NPGAAGKKKN YTASVAASKR KNSLNIVA
|
| Detection Method: | |
| Confidence: | 192.69897 |
| Match: | 4gatA |
| Description: | Erythroid transcription factor GATA-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [405-510] |
1 11 21 31 41 51
| | | | | |
1 PLKSQDIPIP KIASPSIPQY LRSNTRHHLS SSVPIEAETF SSFRPDMNMT MNMNLHNAST 60
61 SSFNNEAFWK PLDSAIDHHS GDTNPNSNMN TTPNGNLSLD WLNLNL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
