| Protein: | YRF1-2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1681 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRF1-2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [459..1681] | [1..1224] |
|
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0.0 | [1..1681] | [1..1681] |
|
Region A: Residues: [1-63] |
1 11 21 31 41 51
| | | | | |
1 MVYTLFQVHT LKFNRKDYDT LSLFYLNRGY YNELSFRVLE RCHEKASARP NDSSTMRTFT 60
61 DFV
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.754 | 0.043 | DNA helicase activity | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.474 | 0.021 | DNA helicase activity | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.363 | 0.007 | DNA helicase activity | a.64.1 | Saposin |
| View | Download | 0.655 | 0.004 | DNA helicase activity | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.754 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.655 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.602 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.593 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.559 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.440 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.362 | N/A | N/A | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.327 | N/A | N/A | d.64.1 | eIF1-like |
| View | Download | 0.308 | N/A | N/A | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.300 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.293 | N/A | N/A | a.101.1 | Uteroglobin-like |
| View | Download | 0.274 | N/A | N/A | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.267 | N/A | N/A | d.214.1 | Hypothetical protein MTH1880 |
| View | Download | 0.265 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.263 | N/A | N/A | d.26.2 | Colicin E3 immunity protein |
| View | Download | 0.263 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.258 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.254 | N/A | N/A | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.253 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.241 | N/A | N/A | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.240 | N/A | N/A | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.237 | N/A | N/A | b.36.1 | PDZ domain-like |
| View | Download | 0.234 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.229 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.224 | N/A | N/A | d.192.1 | YlxR-like |
| View | Download | 0.223 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.218 | N/A | N/A | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.205 | N/A | N/A | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.204 | N/A | N/A | b.52.2 | ADC-like |
| View | Download | 0.201 | N/A | N/A | d.74.3 | RBP11-like subunits of RNA polymerase |
|
Region A: Residues: [64-393] |
1 11 21 31 41 51
| | | | | |
1 SGAPIVRSLQ KSTIRKYGYN LAPYMFLLLH VDELSIFSAY QASLPGEKKV DTERLKRDLC 60
61 PRKPTEIKYF SQICNDMMNK KDRLGDILHI ILRACALNFG AGPRGGAGDE EDRSITNEEP 120
121 IIPSVDEHGL KVCKLRSPNT PRRLRKTLDA VKALLVSSCA CTARDLDIFD DNNGVAMWKW 180
181 IKILYHEVAQ ETALKDSYRI TLVPSSDGVS VCGKLFNREY VRGFYFACKA QFDNLWEELN 240
241 DCFYMPTVVD IASLILRNRE VLFREPKRGI DEYLENDSFL QMIPVKYREI VLPKLRRDTN 300
301 KMTAALKNKV TVAIDELTVP LMWMIHFAVG
|
| Detection Method: | |
| Confidence: | 7.14 |
| Match: | 1llwA |
| Description: | Alpha subunit of glutamate synthase, C-terminal domain; Alpha subunit of glutamate synthase, central and FMN domains; Alpha subunit of glutamate synthase, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [394-580] |
1 11 21 31 41 51
| | | | | |
1 YPYRYPELQL LAFAGPQRNV YVDDTTRRIQ LYTDYNKNGS SEPRLKTLDG LTSDYVFYFV 60
61 TVLRQMQICA LGNSYDAFNH DPWMDVVGFE DPDQVTNRDI SRIVLYSYMF LNTAKGCLVE 120
121 YATFRQYMRE LPKNAPQKLN FREMRQGLIA LGRHCVGSRF ETDLYESATS ELMANHSVQT 180
181 GRNIYGV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [581-1079] |
1 11 21 31 41 51
| | | | | |
1 DSFSLTSVSG TTATLLQERA SERWIQWLGL ESDYHCSFSS TRNAEDVVAG EAASSDHHQK 60
61 ISRVTRKRPR EPKSTNDILV AGQKLFGSSF EFRDLHQLRL CHEIYMADTP SVAVQAPPGY 120
121 GKTELFHLPL IALASKGDVK YVSFLFVPYT VLLANCMIRL SRCGCLNVAP VRNFIEEGCD 180
181 GVTDLYVGIY DDLASTNFTD RIAAWENIVE CTFRTNNVKL GYLIVDEFHN FETEVYRQSQ 240
241 FGGITNLDFD AFEKAIFLSG TAPEAVADAA LQRIGLTGLA KKSMDINELK RSEDLSRGLS 300
301 SYPTRMFNLI KEKSEVPLGH VHKIWKKVES QPEEALKLLL ALFEIEPESK AIVVASTTNE 360
361 VEELACSWRK YFRVVWIHGK LGAAEKVSRT KEFVTDGSMR VLIGTKLVTE GIDIKQLMMV 420
421 IMLDNRLNII ELIQGVGRLR DGGLCYLLSR KNSWAARNRK GELPPIKEGC ITEQVREFYG 480
481 LESKKGKKGQ HVGCCGSRT
|
| Detection Method: | |
| Confidence: | 164.9897 |
| Match: | 1fuuA_ |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1080-1335] |
1 11 21 31 41 51
| | | | | |
1 DLSADTVELI ERMDRLAEKQ ATASMSIVAL PSSFQESNSS DRCRKYCSSD EDSDTCIHGS 60
61 ANASTNATTN SSTNATTTAS TNVRTSATTT ASINVRTSAT TTESTNSSTN ATTTASTNVR 120
121 TSATTTASIN VRTSATTTES TNSNTSATTT ESTDSNTSAT TTESTDSNTS ATTTASTNSS 180
181 TNATTTASTN SSTNATTTES TNASAKEDAN KDGNAEDNRF HPVTDINKES YKRKGSQMVL 240
241 LERKKLKAQF PNTSEN
|
| Detection Method: | |
| Confidence: | 12.41 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1336-1681] |
1 11 21 31 41 51
| | | | | |
1 MNVLQFLGFR SDEIKHLFLY GIDVYFCPEG VFTQYGLCKG CQKMFELCVC WAGQKVSYRR 60
61 MAWEALAVER MLRNDEEYKE YLEDIEPYHG DPVGYLKYFS VKRGEIYSQI QRNYAWYLAI 120
121 TRRRETISVL DSTRGKQGSQ VFRMSGRQIK ELYYKVWSNL RESKTEVLQY FLNWDEKKCR 180
181 EEWEAKDDTV FVEALEKVGV FQRLRSMTSA GLQGPQYVKL QFSRHHRQLR SRYELSLGMH 240
241 LRDQLALGVT PSKVPHWTAF LSMLIGLFCN KTFRQKLEYL LEQISEVWLL PHWLDLANVE 300
301 VLAADNTRVP LYMLMVAVHK ELDSDDVPDG RFDILLCRDS SREVGE
|
| Detection Method: | |
| Confidence: | 7.11 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1585-1681] |
1 11 21 31 41 51
| | | | | |
1 TPSKVPHWTA FLSMLIGLFC NKTFRQKLEY LLEQISEVWL LPHWLDLANV EVLAADNTRV 60
61 PLYMLMVAVH KELDSDDVPD GRFDILLCRD SSREVGE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
