| Protein: | SPT15 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 240 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPT15.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-89 | [1..240] | [1..240] |
|
|
9.0E-82 | [58..239] | [118..299] |
|
|
3.0E-81 | [60..239] | [172..351] |
|
|
1.0E-80 | [33..239] | [73..275] |
|
|
2.0E-80 | [17..239] | [85..306] |
|
|
2.0E-79 | [17..239] | [85..306] |
|
|
2.0E-79 | [58..239] | [137..318] |
|
|
3.0E-79 | [58..239] | [155..336] |
|
Region A: Residues: [1-69] |
1 11 21 31 41 51
| | | | | |
1 MADEERLKEF KEANKIVFDP NTRQVWENQN RDGTKPATTF QSEEDIKRAA PESEKDTSAT 60
61 SGIVPTLQN
|
|
Region B: Residues: [159-240] |
1 11 21 31 41 51
| | | | | |
1 NIVGSCDVKF PIRLEGLAFS HGTFSSYEPE LFPGLIYRMV KPKIVLLIFV SGKIVLTGAK 60
61 QREEIYQAFE AIYPVLSEFR KM
|
| Detection Method: |  |
| Confidence: | 1037.616428 |
| Match: | 1tbaB_ |
| Description: | TATA-box binding protein (TBP), C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 10.1927670598446 | bayes_pls_golite062009 |
| RNA polymerase III transcription factor activity | 8.4318102330583 | bayes_pls_golite062009 |
| transcription regulator activity | 4.66773099672992 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.97397050058114 | bayes_pls_golite062009 |
| DNA binding | 3.68758425895596 | bayes_pls_golite062009 |
| nucleic acid binding | 3.4119217152884 | bayes_pls_golite062009 |
| binding | 3.25203283623613 | bayes_pls_golite062009 |
| RNA polymerase I transcription factor activity | 3.24777019705869 | bayes_pls_golite062009 |
| transcription factor activity | 2.17821704710246 | bayes_pls_golite062009 |
| transcription factor binding | 1.86204668268867 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.59579825271822 | bayes_pls_golite062009 |
| protein binding | 0.938536348073543 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.312991469396539 | bayes_pls_golite062009 |
| transcription activator activity | 0.199341831249925 | bayes_pls_golite062009 |
|
Region A: Residues: [70-158] |
1 11 21 31 41 51
| | | | | |
1 IVATVTLGCR LDLKTVALHA RNAEYNPKRF AAVIMRIREP KTTALIFASG KMVVTGAKSE 60
61 DDSKLASRKY ARIIQKIGFA AKFTDFKIQ
|
| Detection Method: | |
| Confidence: | 1037.616428 |
| Match: | 1tbaB_ |
| Description: | TATA-box binding protein (TBP), C-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
