YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS24A, RPS24B
Organism:	Saccharomyces cerevisiae
Length:	135 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS24A, RPS24B.

Description	E-value	Query Range	Subject Range
RS24_ORYLA - 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1	2.0E-44	[1..133]	[1..132]
rps2402 - 40S ribosomal protein S24 RS24B_SCHPO - 40S ribosomal protein S24-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps2402 PE=2 S...	7.0E-44	[1..132]	[1..132]
RS24_TAKRU - 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1	1.0E-43	[1..133]	[1..132]
RS24_ICTPU - 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1	1.0E-43	[1..132]	[1..131]
CE29465 - WBGene00004493 locus:rps-24 ribosomal protein status:Partially_confirmed TR:O44414 protein_id:AAK392...	2.0E-43	[1..131]	[1..131]
RPS24A, RPS24B - Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to r... gi\|151943094, gi... - gi\|151944789\|gb\|EDN63048.1\| ribosomal protein S24A [Saccharomyces cerevisiae YJM789], gi\|151943094\|g... RS24A_YEAST, RS2... - 40S ribosomal protein S24-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS24B PE=1 ...	4.0E-42	[1..135]	[1..135]
RS24_SPOFR - 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1	5.0E-42	[4..132]	[5..132]
gi\|108868633, gi... - gi\|17887416\|gb\|AAL40881.1\| ribosomal protein S24 [Aedes aegypti], gi\|157107877\|ref\|XP_001649979.1\| 4...	6.0E-42	[3..132]	[2..130]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAVTIRTR KVISNPLLAR KQFVVDVLHP NRANVSKDEL REKLAEVYKA EKDAVSVFGF  60
   61 RTQFGGGKSV GFGLVYNSVA EAKKFEPTYR LVRYGLAEKV EKASRQQRKQ KKNRDKKIFG 120
  121 TGKRLAKKVA RRNAD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.920819
Match:	PF01282
Description:	Ribosomal protein S24e

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.49719655437057	bayes_pls_golite062009
structural molecule activity	8.91971353502188	bayes_pls_golite062009
RNA binding	3.61805230341974	bayes_pls_golite062009
nucleic acid binding	1.63806694539886	bayes_pls_golite062009
binding	1.63388911909805	bayes_pls_golite062009
protein binding	0.228118691402512	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: