YRC Public Data Repository - Protein Structure Prediction

Protein:	TDA2
Organism:	Saccharomyces cerevisiae
Length:	126 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDA2.

Description	E-value	Query Range	Subject Range
TDA2 - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytopla... TDA2_YEAS2 - Topoisomerase I damage affected protein 2 OS=Saccharomyces cerevisiae (strain JAY291) GN=TDA2 PE=3 S... TDA2_YEAST - Topoisomerase I damage affected protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	2.0E-62	[1..126]	[1..126]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMQIEIKDG RSDNSPLPER KLVTLIQESY DSLKDDNEIN LSTESTSNLL IKLVLEKLEK  60
   61 HSSLYKYIAS VTTLNIEGLN EENANFSLKN DIGASWESKK DGIFNYKLED KNNNECYLIT 120
  121 ILWLHK

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits