YRC Public Data Repository - Protein Structure Prediction

Protein:	SNU13
Organism:	Saccharomyces cerevisiae
Length:	126 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNU13.

Description	E-value	Query Range	Subject Range
gi\|195577885, gi... - gi\|195577885\|ref\|XP_002078799.1\| GD23622 [Drosophila simulans], gi\|194190808\|gb\|EDX04384.1\| GD23622 ... FBpp0307465, hoip-PA - The gene hoi-polloi is referred to in FlyBase by the symbol Dmel\hoip (CG3949, FBgn0015393). It is a... gi\|194175058, gi... - gi\|195473347\|ref\|XP_002088957.1\| GE18862 [Drosophila yakuba], gi\|194175058\|gb\|EDW88669.1\| GE18862 [D... gi\|195339509, gi... - gi\|195339509\|ref\|XP_002036362.1\| GM17636 [Drosophila sechellia], gi\|194130242\|gb\|EDW52285.1\| GM17636... gi\|194859213, gi... - gi\|194859213\|ref\|XP_001969331.1\| GG10048 [Drosophila erecta], gi\|190661198\|gb\|EDV58390.1\| GG10048 [D...	4.0E-33	[3..126]	[4..127]
SNU13_SCHPO - 13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... snu13 - U3 snoRNP-associated protein Snu13	6.0E-32	[4..126]	[3..125]
gi\|123998529, gi... - gi\|60655915\|gb\|AAX32521.1\| ribosomal protein L7a [synthetic construct], gi\|123998529\|gb\|ABM86866.1\| ... gi\|57092007 - gi\|57092007\|ref\|XP_537800.1\| PREDICTED: similar to 60S ribosomal protein L7a [Canis familiaris] RL7A_MACFA - 60S ribosomal protein L7a OS=Macaca fascicularis GN=RPL7A PE=2 SV=1 gi\|221139842, gi... - gi\|221139842\|ref\|NP_001137511.1\| 60S ribosomal protein L7a [Macaca mulatta], gi\|109109907\|ref\|XP_001... gi\|114605477, gi... - gi\|114605477\|ref\|XP_001167921.1\| PREDICTED: similar to L7a protein isoform 3 [Pan troglodytes], gi\|1... RPL7A - ribosomal protein L7a RL7A_RAT - 60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2 gi\|56956 - gi\|56956\|emb\|CAA33117.1\| unnamed protein product [Rattus rattus]	3.0E-31	[14..123]	[109..228]
gi\|187609304 - gi\|187609304\|pdb\|2ZKR\|FF Chain f, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... gi\|162287231, gi... - gi\|162287231\|ref\|NP_001104616.1\| hypothetical protein LOC100037086 [Xenopus laevis], gi\|160773913\|gb... RL7A_MOUSE - 60S ribosomal protein L7a OS=Mus musculus GN=Rpl7a PE=1 SV=2	3.0E-31	[14..123]	[109..228]
RL7A_CHICK - 60S ribosomal protein L7a OS=Gallus gallus GN=RPL7A PE=2 SV=2	5.0E-31	[14..123]	[109..228]
RL7A_TAKRU - 60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3	6.0E-31	[7..123]	[110..228]
SNU13_YEAST - 13 kDa ribonucleoprotein-associated protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... gi\|190405538 - gi\|190405538\|gb\|EDV08805.1\| NHP2/L7aE family protein [Saccharomyces cerevisiae RM11-1a] ORFP:5831 - YEL026W, Contig c354 37183-37563 reverse complement SNU13 - RNA binding protein, part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP invol... Sbay_676.15, Sba... - probable YEL026W SNU13 (46959-47339), null gi\|151944683 - gi\|151944683\|gb\|EDN62942.1\| U3 snoRNP protein [Saccharomyces cerevisiae YJM789]	7.0E-31	[1..126]	[1..126]
RL7A_ICTPU - 60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3	8.0E-30	[14..123]	[109..228]
gi\|11602717 - gi\|11602717\|emb\|CAC18545.1\| putative high mobility group-like nuclear protein 2 [Echinococcus multil...	1.0E-29	[1..126]	[1..127]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPNPKAFP LADAALTQQI LDVVQQAANL RQLKKGANEA TKTLNRGISE FIIMAADCEP  60
   61 IEILLHLPLL CEDKNVPYVF VPSRVALGRA CGVSRPVIAA SITTNDASAI KTQIYAVKDK 120
  121 IETLLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	447.035458
Match:	1e7kA_
Description:	Spliceosomal 15.5kd protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	5.75333813716704	bayes_pls_golite062009
RNA binding	5.39762744650785	bayes_pls_golite062009
snoRNA binding	4.95788328272916	bayes_pls_golite062009
structural constituent of ribosome	3.68798692352408	bayes_pls_golite062009
structural molecule activity	3.12718364266877	bayes_pls_golite062009
mRNA binding	2.62944559104613	bayes_pls_golite062009
nucleic acid binding	2.39301463005357	bayes_pls_golite062009
binding	2.34187530323842	bayes_pls_golite062009
protein binding	0.381324299701367	bayes_pls_golite062009
catalytic activity	0.264002643439785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: