YRC Public Data Repository - Protein Structure Prediction

Protein:	WBP1
Organism:	Saccharomyces cerevisiae
Length:	430 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WBP1.

Description	E-value	Query Range	Subject Range
WBP1 - Beta subunit of the oligosaccharyl transferase (OST) glycoprotein complex; required for N-linked gly... gi\|207346043 - gi\|207346043\|gb\|EDZ72660.1\| YEL002Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405559 - gi\|190405559\|gb\|EDV08826.1\| hypothetical protein SCRG_04465 [Saccharomyces cerevisiae RM11-1a] OSTB_YEAST - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1 OS=Saccharomyces cerevis...	0.0	[1..430]	[1..430]
OST48_CANLF - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Canis lupus familia...	0.0	[5..414]	[16..436]
DDOST - dolichyl-diphosphooligosaccharide--protein glycosyltransferase	0.0	[7..414]	[28..447]
OST48_PIG - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Sus scrofa GN=DDOST...	0.0	[5..414]	[10..430]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[22..414]	[1..405]
OST48_CHICK - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Gallus gallus GN=DD...	0.0	[23..414]	[1..404]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	0.0	[22..414]	[1..406]
gi\|220959718, gi... - gi\|220959718\|gb\|ACL92402.1\| Ost48-PA [synthetic construct], gi\|220951494\|gb\|ACL88290.1\| Ost48-PA [sy... Ost48-PA - The gene Oligosaccharyltransferase 48kD subunit is referred to in FlyBase by the symbol Dmel\Ost48 (...	0.0	[5..429]	[3..448]
OSTB_SCHPO - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit wbp1 OS=Schizosaccharomyces p... SPCC338.15 - dolichyl-di-phosphooligosaccharide-protein glycotransferase subunit	0.0	[9..430]	[5..437]
gi\|685153 - gi\|685153\|gb\|AAB31098.1\| 78 kda apamin binding protein [cattle, brain synaptosomes, Peptide, 438 aa]	0.0	[5..379]	[10..397]

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Predicted Domain #1

Region A:
Residues: [1-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTDWNFFFC ILLQAIFVVG TQTSRTLVLY DQSTEPLEEY SVYLKDLEQR NYKLEYLDIN  60
   61 STSTTVDLYD KEQRLFDNII VFPTKGGKNL ARQIPVKQLI KFFENEGNIL CMSSPGAVPN 120
  121 TIRLFLNELG IYPSPKGHVI RDYFSPSSEE LVVSSNHLLN KYVYNARKSE DFVFGESSAA 180
  181 LLENREQIVP ILNAPRTSFT ESKGKCNSWT SGSQGFLVVG FQNLNNARLV WIGSSDFLKN 240
  241 KNQDSNQEFA KELLKWTFNE KSVIKSVHAV HSHADGTSYD EEPYKIKDKV IYSVGFSEWN 300
  301 GEEWLPHIAD DIQFELRQVD PYYRLTLSPS GNDSETQYYT TGEFILPDRH GVFTFLTDYR 360
  361 KIGLSFTTDK DVKAIRHLAN DEYPRSWEIS NSWVYISAIC GVIVAWIFFV VSFVTTSSVG 420
  421 KKLETFKKTN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	290.619789
Match:	PF03345
Description:	Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.21522719658673	bayes_pls_golite062009
binding	1.10799322720495	bayes_pls_golite062009
nucleic acid binding	1.00678459791194	bayes_pls_golite062009
ligase activity	0.952686615697528	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [282-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPYKIKDKVI YSVGFSEWNG EEWLPHIADD IQFELRQVDP YYRLTLSPSG NDSETQYYTT  60
   61 GEFILPDRHG VFTFLTDYRK IGLSFTTDKD VKAIRHLAND EYPRSWEISN SWVYISAICG 120
  121 VIVAWIFFVV SFVTTSSVGK KLETFKKTN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: