| Protein: | PUF6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 656 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUF6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..656] | [1..656] |
|
|
0.0 | [4..654] | [19..642] |
|
|
0.0 | [30..398] | [828..1167] |
|
|
0.0 | [30..398] | [827..1164] |
|
|
0.0 | [30..398] | [331..670] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MAPLTKKTNG KRSAKEVSHS EKKLAKKPRI SIDSSDEESE LSKKEDAVSS SSDDDDLDDL 60
61 STSDSEAEEE ADELDISDDS EEHENENEEK EGKDKSEGGE NGNHTEQRKL LKERKMQRKS 120
121 GTQVQQIKSV WERLRVKTPP LPKQIREKLS NEIWELS
|
| Detection Method: |  |
| Confidence: | 131.67837 |
| Match: | 1ib2A_ |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.43298635785702 | bayes_pls_golite062009 |
| protein binding | 1.50566694420704 | bayes_pls_golite062009 |
| RNA binding | 1.20550543134698 | bayes_pls_golite062009 |
| structural molecule activity | 1.20255343083458 | bayes_pls_golite062009 |
| nucleic acid binding | 0.169755106399802 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.0330689772947346 | bayes_pls_golite062009 |
|
Region A: Residues: [158-257] |
1 11 21 31 41 51
| | | | | |
1 KDCISDLVLK HDASRIVQTL VKYSSKDRRE QIVDALKGKF YVLATSAYGK YLLVKLLHYG 60
61 SRSSRQTIIN ELHGSLRKLM RHREGAYVVE DLFVLYATHE
|
| Detection Method: | |
| Confidence: | 131.67837 |
| Match: | 1ib2A_ |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.32703786067369 | bayes_pls_golite062009 |
| protein binding | 1.3800948965226 | bayes_pls_golite062009 |
| structural molecule activity | 1.20216103967092 | bayes_pls_golite062009 |
| RNA binding | 1.04913960175873 | bayes_pls_golite062009 |
| nucleic acid binding | 0.118461769548431 | bayes_pls_golite062009 |
|
Region A: Residues: [258-444] |
1 11 21 31 41 51
| | | | | |
1 QRQQMIKEFW GSEYAVFRET HKDLTIEKVC ESSIEKRNII ARNLIGTITA SVEKGSTGFQ 60
61 ILHAAMREYV KIANEKEISE MIELLHEQFA ELVHTPEGSD VACTLVARAN AKERKLILKA 120
121 LKNHAEKLIK NEYGNIVFIT ILNCVDDTVL VFKTFSPTVK EHLQEFIIDK FGRRPWLYIL 180
181 LGLDGKY
|
| Detection Method: | |
| Confidence: | 131.67837 |
| Match: | 1ib2A_ |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [445-656] |
1 11 21 31 41 51
| | | | | |
1 FSPIVKNELL RYIELSKATS KKDPLQRRHE LLSKFAPMFL STISKDYSSI LTENLGCQFI 60
61 AEVLINDELY AQLNEKDQEK YQQVLNNILT TFKGDITEEE HPIHRAFSTR LLKALIQGGK 120
121 WNNKEKKVIP LKNVQGLGVP FAEKLYDEII DSSNLLEWIN NADSSFTIVA LYETLKDQKE 180
181 GKPFLKDLRG VQSKITTDES NKGSQLLAKL LK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
