| Protein: | RRP17 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 235 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP17.
| Description | E-value | Query Range |
Subject Range |
|
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2.0E-50 | [61..234] | [70..243] |
|
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6.0E-41 | [63..232] | [18..189] |
|
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2.0E-40 | [61..234] | [14..188] |
|
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3.0E-40 | [61..234] | [14..188] |
|
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6.0E-40 | [61..234] | [14..188] |
|
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1.0E-39 | [61..234] | [14..188] |
|
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1.0E-37 | [60..235] | [53..229] |
|
Region A: Residues: [1-85] |
1 11 21 31 41 51
| | | | | |
1 MAVHTNRQIL TRGKNYATKQ SKKFGTDEVT FDKDSRLDYL TGFHKRKLQR QKKAQEFIKE 60
61 QERLRKIEER QKIRQERKEV MEEQL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.390 | 0.243 | rRNA processing | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.451 | 0.021 | rRNA processing | a.101.1 | Uteroglobin-like |
| View | Download | 0.384 | 0.009 | rRNA processing | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.426 | 0.005 | rRNA processing | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.355 | 0.004 | rRNA processing | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.332 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.321 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.318 | N/A | N/A | a.130.1 | Chorismate mutase II |
| View | Download | 0.300 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.287 | N/A | N/A | a.21.1 | HMG-box |
| View | Download | 0.277 | N/A | N/A | d.201.1 | SRP19 |
| View | Download | 0.266 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.251 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.233 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.231 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.228 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.223 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.221 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.220 | N/A | N/A | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.216 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.216 | N/A | N/A | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.213 | N/A | N/A | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.213 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.213 | N/A | N/A | a.60.7 | 5' to 3' exonuclease, C-terminal subdomain |
| View | Download | 0.212 | N/A | N/A | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
| View | Download | 0.212 | N/A | N/A | a.101.1 | Uteroglobin-like |
| View | Download | 0.205 | N/A | N/A | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.202 | N/A | N/A | a.39.1 | EF-hand |
|
Region A: Residues: [86-235] |
1 11 21 31 41 51
| | | | | |
1 KTFKESLNLE AEIEDAKNDK TEDLQVESDE SWHGFDSDKD DGDNDNNESS VKPILKKGAI 60
61 TEIYDDSTTV ELETLEPNDN FEYLAQLNNV KLEKAEKVLK QSINRATKYA KFLGVDEKQK 120
121 KKPRVKKFRY LTKNERRINQ RKANDNKRRR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.252 | 0.102 | rRNA processing | a.133.1 | Phospholipase A2, PLA2 |
