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View Structure Prediction Details

Protein: RRP17
Organism: Saccharomyces cerevisiae
Length: 235 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP17.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-50 [61..234] [70..243]
NDE1_EMENI - Nuclear distribution protein nudE OS=Emericella nidulans GN=nudE PE=1 SV=1
NDE1_EMENI - Nuclear distribution protein nudE OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /...
6.0E-41 [63..232] [18..189]
gi|12963777, gi|... - gi|9965368|gb|AAG10061.1| NudeL [Mus musculus], gi|12963777|ref|NP_076157.1| NudeL protein [Mus musc...
2.0E-40 [61..234] [14..188]
NDEL1_MOUSE - Nuclear distribution protein nudE-like 1 OS=Mus musculus GN=Ndel1 PE=1 SV=2
NDEL1_RAT - Nuclear distribution protein nudE-like 1 OS=Rattus norvegicus GN=Ndel1 PE=1 SV=1
3.0E-40 [61..234] [14..188]
ENSMMUT000000422... - null, null
NDEL1 - nudE nuclear distribution gene E homolog (A. nidulans)-like 1
gi|114669131, gi... - gi|114669137|ref|XP_001166869.1| PREDICTED: nudE nuclear distribution gene E homolog like 1 (A. nidu...
6.0E-40 [61..234] [14..188]
NDEL1_RABIT - Nuclear distribution protein nudE-like 1 OS=Oryctolagus cuniculus GN=NDEL1 PE=1 SV=3
1.0E-39 [61..234] [14..188]
gi|2072294 - gi|2072294|gb|AAC60121.1| mitotic phosphoprotein 43 [Xenopus laevis]
1.0E-37 [60..235] [53..229]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVHTNRQIL TRGKNYATKQ SKKFGTDEVT FDKDSRLDYL TGFHKRKLQR QKKAQEFIKE  60
   61 QERLRKIEER QKIRQERKEV MEEQL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTFKESLNLE AEIEDAKNDK TEDLQVESDE SWHGFDSDKD DGDNDNNESS VKPILKKGAI  60
   61 TEIYDDSTTV ELETLEPNDN FEYLAQLNNV KLEKAEKVLK QSINRATKYA KFLGVDEKQK 120
  121 KKPRVKKFRY LTKNERRINQ RKANDNKRRR 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle