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View Structure Prediction Details

Protein: YDR338C
Organism: Saccharomyces cerevisiae
Length: 695 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR338C.

Description E-value Query
Range
Subject
Range
YD338_YEAST - Uncharacterized transporter YDR338C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR3...
YDR338C - Putative protein of unknown function
0.0 [1..695] [1..695]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
2.0E-96 [123..672] [65..616]
DTX39_ARATH - Protein DETOXIFICATION 39 OS=Arabidopsis thaliana GN=DTX39 PE=2 SV=1
1.0E-93 [171..676] [16..504]
SPCC4B3.13 - MatE family transporter
YJ2D_SCHPO - Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B...
1.0E-90 [132..670] [1..539]
gi|16797803 - gi|16797803|dbj|BAB71817.1| hypothetical membrane protein-1 [Marchantia polymorpha]
6.0E-90 [186..682] [6..507]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGILSKTLS EVHPSLRTNG MGIGNTHRRI SLGFLPPNKK NPLVRKFRAR TRNIDQRSFR  60
   61 SLTDDFGSNV HEPNPYLGNI DEEPDLYYHD EEDGELSRTI SLPSRVSETP ELSPQDVDWI 120
  121 LHEHERRYSS VCNSDNEEAS QSNTPDRIQE YSGRELEYDE FMNRLQAQKQ KLTRSAVTDA 180
  181 KGTSHHRRPS FVSVTSRGSV 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [201-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTIYQEIDEN DSEALAELAH SHVTFKSEAR VLASYSFPLI FTFLLEQIFP MVCSLTVGHL  60
   61 GKNELAAVSL ASMTSNITLA IFEGIATSLD TLCPQAYGSG RFYSVGVHLQ RCIAFSLVIY 120
  121 IPFAVMWWYS EPLLSYIIPE KEL

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.25
Match: 1b3uA
Description: Constant regulatory domain of protein phosphatase 2a, pr65alpha
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [344-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INLTSRFLRV LILGAPAYIF FENLKRFLQA QGIFDAGIYV LTICAPLNVL VSYTLVWNKY  60
   61 IGVGFIGAAI AVVLNFWLMF FLLLFYALYI DGRKCWGGFS RKAFTHWNDL GHLAFSGIIM 120
  121 LEAEELSYEL LTLFSAYYGV SYLAAQSAVS TMAALLYMIP FAIGISTST

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.25
Match: 1b3uA
Description: Constant regulatory domain of protein phosphatase 2a, pr65alpha
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [513-695]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIANFIGAKR TDFAHISSQV GLSFSFIAGF INCCILVFGR NLIANIYSKD PEVIKLIAQV  60
   61 LPLVGIVQNF DSLNAVAGSC LRGQGMQSLG SIVNLMAYYL FGIPLALILS WFFDMKLYGL 120
  121 WIGIGSAMLL IGLVEAYYVL FPDWDKIMTY AEILKETEDD EVDSDEYLTD SDDPDENTAL 180
  181 LGA

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.25
Match: 1b3uA
Description: Constant regulatory domain of protein phosphatase 2a, pr65alpha
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle