| Protein: | RMD5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 421 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMD5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..421] | [1..421] |
|
|
0.0 | [8..417] | [15..383] |
|
|
0.0 | [8..417] | [26..394] |
|
|
2.0E-93 | [53..418] | [4..381] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MSELLDSFET EFAKFYTDSN LEETNLQKCL DHTHEFKSQL KKLKAHLNKH IQESKPEVYN 60
61 KLSDKEKQKF KR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [73-280] |
1 11 21 31 41 51
| | | | | |
1 KRELIIEKLS KSQRQWDHSV KKQIKYVSQQ SNRFNKSTLN KLKEFDIDSV YVNKLPKETM 60
61 ENVNEAIGYH ILRYSIDNMP LGNKNEAFQY LKDVYGITNK ESTEFIEMGQ IVHDLKKGDT 120
121 ESCLKWCSNE MESLSSNHTA LSSLKFDLYT LSAMQIVKHG NPVELYYQIT QNAPLDCFRH 180
181 REKELMQNVV PLLTKSLIGQ PIEDIDSK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [281-421] |
1 11 21 31 41 51
| | | | | |
1 VNKELKECTS LFIKEYCAAK HIFFDSPLFL IVLSGLISFQ FFIKYKTIRE LAHVDWTTKD 60
61 ELPFDVKLPD FLTHFHPIFI CPVLKEETTT ENPPYSLACH HIISKKALDR LSKNGTITFK 120
121 CPYCPVNTSM SSTKKVRFVM L
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.281 | 0.930 | cytosol | a.1.1 | Globin-like |
|
Region A: Residues: [316-421] |
1 11 21 31 41 51
| | | | | |
1 LISFQFFIKY KTIRELAHVD WTTKDELPFD VKLPDFLTHF HPIFICPVLK EETTTENPPY 60
61 SLACHHIISK KALDRLSKNG TITFKCPYCP VNTSMSSTKK VRFVML
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 2ct2A |
| Description: | Solution Structure of the RING domain of the Tripartite motif protein 32 |
Matching Structure (courtesy of the PDB): |
|
