| Protein: | RMD5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 421 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMD5.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..421] | [1..421] |
|
|
0.0 | [8..417] | [15..383] |
|
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0.0 | [8..417] | [26..394] |
|
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2.0E-93 | [53..418] | [4..381] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MSELLDSFET EFAKFYTDSN LEETNLQKCL DHTHEFKSQL KKLKAHLNKH IQESKPEVYN 60
61 KLSDKEKQKF KR
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.665 | 0.696 | cytosol | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.686 | 0.000 | cytosol | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.597 | 0.000 | cytosol | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.686 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.665 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.621 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.608 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.597 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.597 | N/A | N/A | a.65.1 | Annexin |
| View | Download | 0.551 | N/A | N/A | a.65.1 | Annexin |
| View | Download | 0.547 | N/A | N/A | a.17.1 | p8-MTCP1 |
| View | Download | 0.511 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.511 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.511 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.500 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.496 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.494 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.463 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.457 | N/A | N/A | a.17.1 | p8-MTCP1 |
| View | Download | 0.457 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.449 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.449 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.448 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.439 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.438 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.436 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.434 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.424 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.404 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.403 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.399 | N/A | N/A | a.65.1 | Annexin |
| View | Download | 0.392 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.388 | N/A | N/A | d.45.1 | ClpS-like |
| View | Download | 0.385 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.382 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.376 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.368 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.367 | N/A | N/A | a.5.2 | UBA-like |
| View | Download | 0.365 | N/A | N/A | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.350 | N/A | N/A | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.348 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.341 | N/A | N/A | d.68.6 | DNA-binding protein Sso10b (AlbA) |
| View | Download | 0.336 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.334 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.332 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.329 | N/A | N/A | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.329 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.323 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.322 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.320 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.316 | N/A | N/A | f.1.5 | Exotoxin A, middle domain |
| View | Download | 0.314 | N/A | N/A | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.314 | N/A | N/A | a.65.1 | Annexin |
| View | Download | 0.313 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.304 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.302 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.300 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.299 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.297 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.296 | N/A | N/A | a.17.1 | p8-MTCP1 |
| View | Download | 0.293 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.291 | N/A | N/A | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.290 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.288 | N/A | N/A | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.288 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.284 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.283 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.281 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.280 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.277 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.276 | N/A | N/A | a.17.1 | p8-MTCP1 |
| View | Download | 0.272 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.272 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.270 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.265 | N/A | N/A | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.263 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.262 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.262 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.261 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.259 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.259 | N/A | N/A | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.258 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.257 | N/A | N/A | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.255 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.255 | N/A | N/A | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.253 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.250 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.249 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.246 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.244 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.242 | N/A | N/A | a.161.1 | beta-catenin-interacting protein ICAT |
| View | Download | 0.242 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.241 | N/A | N/A | a.134.1 | Fungal elicitin |
| View | Download | 0.241 | N/A | N/A | a.59.1 | PAH2 domain |
| View | Download | 0.240 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.238 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.238 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.237 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.236 | N/A | N/A | c.9.1 | Barstar (barnase inhibitor) |
| View | Download | 0.236 | N/A | N/A | a.5.2 | UBA-like |
| View | Download | 0.234 | N/A | N/A | a.134.1 | Fungal elicitin |
| View | Download | 0.233 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.233 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.229 | N/A | N/A | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.228 | N/A | N/A | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.226 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.226 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.225 | N/A | N/A | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.225 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.224 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.224 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.223 | N/A | N/A | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.220 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.220 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.219 | N/A | N/A | a.134.1 | Fungal elicitin |
| View | Download | 0.218 | N/A | N/A | a.17.1 | p8-MTCP1 |
| View | Download | 0.218 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.215 | N/A | N/A | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.214 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.212 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.211 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.208 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.208 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.207 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.207 | N/A | N/A | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.205 | N/A | N/A | a.134.1 | Fungal elicitin |
| View | Download | 0.204 | N/A | N/A | a.2.3 | Chaperone J-domain |
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Region A: Residues: [73-280] |
1 11 21 31 41 51
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1 KRELIIEKLS KSQRQWDHSV KKQIKYVSQQ SNRFNKSTLN KLKEFDIDSV YVNKLPKETM 60
61 ENVNEAIGYH ILRYSIDNMP LGNKNEAFQY LKDVYGITNK ESTEFIEMGQ IVHDLKKGDT 120
121 ESCLKWCSNE MESLSSNHTA LSSLKFDLYT LSAMQIVKHG NPVELYYQIT QNAPLDCFRH 180
181 REKELMQNVV PLLTKSLIGQ PIEDIDSK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [281-421] |
1 11 21 31 41 51
| | | | | |
1 VNKELKECTS LFIKEYCAAK HIFFDSPLFL IVLSGLISFQ FFIKYKTIRE LAHVDWTTKD 60
61 ELPFDVKLPD FLTHFHPIFI CPVLKEETTT ENPPYSLACH HIISKKALDR LSKNGTITFK 120
121 CPYCPVNTSM SSTKKVRFVM L
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.281 | 0.930 | cytosol | a.1.1 | Globin-like |
| View | Download | 0.269 | 0.045 | cytosol | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.296 | 0.000 | cytosol | a.74.1 | Cyclin-like |
| View | Download | 0.273 | 0.000 | cytosol | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.275 | 0.000 | cytosol | a.167.1 | Porin chaperone SurA, peptide-binding domain |
| View | Download | 0.232 | N/A | N/A | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.228 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.221 | N/A | N/A | a.182.1 | GatB/YqeY domain |
| View | Download | 0.200 | N/A | N/A | c.55.1 | Actin-like ATPase domain |
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Region A: Residues: [316-421] |
1 11 21 31 41 51
| | | | | |
1 LISFQFFIKY KTIRELAHVD WTTKDELPFD VKLPDFLTHF HPIFICPVLK EETTTENPPY 60
61 SLACHHIISK KALDRLSKNG TITFKCPYCP VNTSMSSTKK VRFVML
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 2ct2A |
| Description: | Solution Structure of the RING domain of the Tripartite motif protein 32 |
Matching Structure (courtesy of the PDB): |
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