YRC Public Data Repository - Protein Structure Prediction

Protein:	TRS23
Organism:	Saccharomyces cerevisiae
Length:	219 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRS23.

Description	E-value	Query Range	Subject Range
gi\|190404805 - gi\|190404805\|gb\|EDV08072.1\| transport protein particle 23 kDa subunit [Saccharomyces cerevisiae RM11... gi\|151942222 - gi\|151942222\|gb\|EDN60578.1\| TRapp subunit [Saccharomyces cerevisiae YJM789] gi\|207346535 - gi\|207346535\|gb\|EDZ73007.1\| YDR246Wp-like protein [Saccharomyces cerevisiae AWRI1631] TRS23_YEAST - Trafficking protein particle complex subunit 23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... TRS23 - One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates...	2.0E-76	[1..219]	[1..219]
TPPC4_MOUSE - Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1	2.0E-61	[1..219]	[1..210]
gi\|55637071 - gi\|55637071\|ref\|XP_508802.1\| PREDICTED: similar to Trafficking protein particle complex subunit 4 (S... TPPC4_PONPY - Trafficking protein particle complex subunit 4 - Pongo pygmaeus (Orangutan) TPPC4_PONAB - Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1 TRAPPC4 - trafficking protein particle complex 4	2.0E-59	[1..219]	[1..210]
Trs23-PA - This gene is referred to in FlyBase by the symbol Dmel\Trs23 (CG9298, FBgn0260861). It is a protein_...	3.0E-50	[1..219]	[1..210]
CE07190 - synbindin TRS23 family status:Confirmed UniProt:Q20100 protein_id:AAA93486.1	2.0E-45	[3..219]	[5..216]
gi\|215764999, gi... - gi\|34914656\|ref\|NP_918675.1\| P0504D03.19 [Oryza sativa (japonica cultivar-group)], gi\|215764999\|dbj\|...	1.0E-36	[6..218]	[36..178]
gi\|25405441, gi\|... - gi\|79319655\|ref\|NP_001031168.1\| synbindin, putative [Arabidopsis thaliana], gi\|4836927\|gb\|AAD30629.1...	2.0E-35	[4..218]	[24..168]
gi\|23957751, gi\|... - gi\|7672214\|emb\|CAA15613.2\| Sybindin-like protein, putative [Plasmodium falciparum 3D7], gi\|23957751\|...	8.0E-30	[3..218]	[1..144]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIETILVIN KSGGLIYQRN FTNDEQKLNS NEYLILASTL HGVFAIASQL TPKALQLTQQ  60
   61 TNIENTIPYI PYVG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNRSDTRN GGGNNNKHTN NEKLGSFKGD DFFKEPFTNW NKSGLRQLCT DQFTMFIYQT  60
   61 LTGLKFVAIS SSVMPQRQPT IATTDKPDRP KSTSNLAIQI ADNFLRKVYC LYSDYVMKDP 120
  121 SYSMEMPIRS NLFDEKVKKM VENLQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits