YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL7
Organism:	Saccharomyces cerevisiae
Length:	292 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL7.

Description	E-value	Query Range	Subject Range
RM07_YEAST - 54S ribosomal protein L7, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... MRPL7 - Mitochondrial ribosomal protein of the large subunit gi\|151942214 - gi\|151942214\|gb\|EDN60570.1\| YmL5/7 [Saccharomyces cerevisiae YJM789]	0.0	[1..292]	[1..292]
gi\|28922248, gi\|... - gi\|32405796\|ref\|XP_323511.1\| hypothetical protein ( (AL513445) related to ribosomal protein L5 precu... gi\|85099166 - gi\|85099166\|ref\|XP_960729.1\| hypothetical protein NCU04171 [Neurospora crassa OR74A]	3.0E-74	[37..287]	[93..349]
RL5_RHILO - 50S ribosomal protein L5 OS=Rhizobium loti (strain MAFF303099) GN=rplE PE=3 SV=1 RL5_RHILO - 50S ribosomal protein L5 OS=Rhizobium loti GN=rplE PE=3 SV=1	1.0E-72	[92..288]	[1..191]
RM07_SCHPO - Probable 54S ribosomal protein L7, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... mrpl7 - mitochondrial ribosomal protein subunit L7	6.0E-71	[37..287]	[23..277]
RL5_MICLU - 50S ribosomal protein L5 OS=Micrococcus luteus GN=rplE PE=3 SV=1	2.0E-69	[96..288]	[2..188]
gi\|221312261 - gi\|221312261\|ref\|ZP_03594066.1\| 50S ribosomal protein L5 [Bacillus subtilis subsp. subtilis str. NCI... RL5_BACSU - 50S ribosomal protein L5 OS=Bacillus subtilis (strain 168) GN=rplE PE=1 SV=1 gi\|221317195 - gi\|221317195\|ref\|ZP_03598489.1\| 50S ribosomal protein L5 [Bacillus subtilis subsp. subtilis str. JH6... RL5_BACSU - 50S ribosomal protein L5 OS=Bacillus subtilis GN=rplE PE=3 SV=1 gi\|221321458 - gi\|221321458\|ref\|ZP_03602752.1\| 50S ribosomal protein L5 [Bacillus subtilis subsp. subtilis str. SMY...	8.0E-69	[106..289]	[2..179]
gi\|14719574, gi\|... - gi\|14719575\|pdb\|1IQ4\|B Chain B, 5s-Rrna Binding Ribosomal Protein L5 From Bacillus Stearothermophilu...	1.0E-68	[106..289]	[2..179]
gi\|153217554, gi... - gi\|153217554\|ref\|ZP_01951235.1\| ribosomal protein L5 [Vibrio cholerae 1587], gi\|124113496\|gb\|EAY3231... gi\|153225193, gi... - gi\|153225193\|ref\|ZP_01954716.1\| ribosomal protein L5 [Vibrio cholerae MAK 757], gi\|124117359\|gb\|EAY3... gi\|229369525, gi... - gi\|229606870\|ref\|YP_002877518.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae MJ-1236], gi\|2293... gi\|229335118, gi... - gi\|229527486\|ref\|ZP_04416878.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae 12129(1)], gi\|2293... gi\|254292236, gi... - gi\|254292236\|ref\|ZP_04963000.1\| ribosomal protein L5 [Vibrio cholerae AM-19226], gi\|197750430\|ref\|YP... gi\|229524565, gi... - gi\|229524565\|ref\|ZP_04413970.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae bv. albensis VL426... gi\|229521650, gi... - gi\|229521650\|ref\|ZP_04411068.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae TM 11079-80], gi\|2... gi\|229516837, gi... - gi\|229516837\|ref\|ZP_04406283.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae RC9], gi\|229345900... gi\|148873353, gi... - gi\|153831166\|ref\|ZP_01983833.1\| ribosomal protein L5 [Vibrio cholerae 623-39], gi\|148873353\|gb\|EDL71... gi\|229513507, gi... - gi\|229513507\|ref\|ZP_04402971.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae TMA 21], gi\|229349... gi\|229507364, gi... - gi\|229507364\|ref\|ZP_04396869.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae BX 330286], gi\|229... RL5_VIBCM - 50S ribosomal protein L5 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplE PE=3 SV=1 gi\|183013146, gi... - gi\|183179735\|ref\|ZP_02957946.1\| ribosomal protein L5 [Vibrio cholerae MZO-3], gi\|183013146\|gb\|EDT884... RL5_VIBCH - 50S ribosomal protein L5 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN... gi\|254846829, gi... - gi\|75828592\|ref\|ZP_00757967.1\| COG0094: Ribosomal protein L5 [Vibrio cholerae MO10], gi\|254851124\|re... RL5_VIBC3 - 50S ribosomal protein L5 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O... gi\|121628099, gi... - gi\|75814256\|ref\|ZP_00744872.1\| COG0094: Ribosomal protein L5 [Vibrio cholerae V52], gi\|121730157\|ref... RL5_VIBCH - 50S ribosomal protein L5 OS=Vibrio cholerae GN=rplE PE=3 SV=1	2.0E-68	[107..289]	[3..179]
RL5_SALCH - 50S ribosomal protein L5 OS=Salmonella choleraesuis GN=rplE PE=3 SV=1 RL5_SALTY - 50S ribosomal protein L5 OS=Salmonella typhimurium GN=rplE PE=3 SV=2 RL5_SALNS - 50S ribosomal protein L5 OS=Salmonella newport (strain SL254) GN=rplE PE=3 SV=1 RL5_SALCH - 50S ribosomal protein L5 OS=Salmonella choleraesuis (strain SC-B67) GN=rplE PE=3 SV=1 RL5_SALHS - 50S ribosomal protein L5 OS=Salmonella heidelberg (strain SL476) GN=rplE PE=3 SV=1 RL5_SALPA - 50S ribosomal protein L5 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rplE PE=3 SV=1 gi\|194471288, gi... - gi\|194471288\|ref\|ZP_03077272.1\| ribosomal protein L5 [Salmonella enterica subsp. enterica serovar Ke... RL5_SALSV - 50S ribosomal protein L5 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplE PE=3 SV=1 gi\|168264689, gi... - gi\|205346893\|gb\|EDZ33524.1\| ribosomal protein L5 [Salmonella enterica subsp. enterica serovar Hadar ... RL5_SALPB - 50S ribosomal protein L5 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplE PE=3 SV=1 gi\|195628881, gi... - gi\|195628881\|gb\|EDX48291.1\| ribosomal protein L5 [Salmonella enterica subsp. enterica serovar Newpor... RL5_SALTY - 50S ribosomal protein L5 OS=Salmonella typhimurium GN=rplE PE=3 SV=2 RL5_SALTI - 50S ribosomal protein L5 OS=Salmonella typhi GN=rplE PE=3 SV=2 RL5_SALCH - 50S ribosomal protein L5 OS=Salmonella choleraesuis GN=rplE PE=3 SV=1 RL5_SALPA - 50S ribosomal protein L5 OS=Salmonella paratyphi A GN=rplE PE=3 SV=1 RL5_SALTI - 50S ribosomal protein L5 OS=Salmonella typhi GN=rplE PE=3 SV=2 gi\|16762855 - gi\|16762855\|ref\|NP_458472.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serovar T... RL5_SALTY - 50S ribosomal protein L5 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rplE PE=... gi\|29139980, gi\|... - gi\|29144342\|ref\|NP_807684.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serovar T... gi\|213646536 - gi\|213646536\|ref\|ZP_03376589.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|213852172 - gi\|213852172\|ref\|ZP_03381704.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|213999772 - gi\|213999772\|ref\|ZP_03410507.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... RL5_SALPC - 50S ribosomal protein L5 OS=Salmonella paratyphi C (strain RKS4594) GN=rplE PE=3 SV=1 gi\|213418134 - gi\|213418134\|ref\|ZP_03351200.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|213425763 - gi\|213425763\|ref\|ZP_03358513.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|213581220 - gi\|213581220\|ref\|ZP_03363046.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|213612421 - gi\|213612421\|ref\|ZP_03370247.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|200389086, gi... - gi\|200389086\|ref\|ZP_03215698.1\| ribosomal protein L5 [Salmonella enterica subsp. enterica serovar Vi... RL5_SALG2 - 50S ribosomal protein L5 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplE PE=3 SV=1 RL5_SALEP - 50S ribosomal protein L5 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplE PE=3 SV=1 gi\|209900872, gi... - gi\|209905804\|ref\|ZP_03280288.1\| hypothetical protein ENTCAN_00029 [Enterobacter cancerogenus ATCC 35... RL5_SALA4 - 50S ribosomal protein L5 OS=Salmonella agona (strain SL483) GN=rplE PE=3 SV=1 gi\|197242849, gi... - gi\|197264594\|ref\|ZP_03164668.1\| ribosomal protein L5 [Salmonella enterica subsp. enterica serovar Sa... RL5_SALPK - 50S ribosomal protein L5 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplE PE=3 SV=1 RL5_SALDC - 50S ribosomal protein L5 OS=Salmonella dublin (strain CT_02021853) GN=rplE PE=3 SV=1 gi\|283788056\|ref... - 50S ribosomal subunit protein L5 [Citrobacter rodentium ICC168] RL5_SALPB - 50S ribosomal protein L5 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplE PE=3 SV=1 gi\|238913857 - gi\|238913857\|ref\|ZP_04657694.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=rplE] [protein=50S ribosomal protein L5] [protein_id=YP_005239618.1] [location=complement(3604...	2.0E-68	[107..289]	[3..179]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRFSLVTHR SFSHSCVKPK SACSLVKPVH HLVKIDKSKL SPRFPELKYD KSDIRSPGFK  60
   61 PKDTHADRLN DHYLNTLQSD LLLINYSHNA AVVKGLKQRA WS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [103-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDSPYHLNRP PKNPRGSKAQ LPDIHPIKWS NIPGLESVVI NCFVREAREN QLLAITAALQ  60
   61 LQQITGCKPH PIFSKNDVPT WKLRKGHQMG AKVELKGKEM SQFLSTLTEI VLPRIREYKG 120
  121 ISNQSGNRFG GISFGLTAED IKFFPEIDAN QDSWPKTFGM HININTSAQL DYQARTLLSG 180
  181 FQFPFFGEEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	264.626727
Match:	1iq4A_
Description:	Ribosomal protein L5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0077098174023	bayes_pls_golite062009
structural molecule activity	9.43117206427219	bayes_pls_golite062009
binding	1.22985833191636	bayes_pls_golite062009
protein binding	0.551360246680731	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: