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View Structure Prediction Details

Protein: ATC1
Organism: Saccharomyces cerevisiae
Length: 294 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATC1.

Description E-value Query
Range
Subject
Range
ATC1 - Nuclear protein, possibly involved in regulation of cation stress responses and/or in the establishm...
LIC4_YEAST - Protein ATC1/LIC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATC1 PE=1 SV=1
0.0 [1..294] [1..294]
gi|5531282 - gi|5531282|emb|CAB50895.1| ATC1 homologue [Kluyveromyces lactis]
4.0E-49 [163..289] [2..126]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTNQSNPNT DLTDDANIEH TLHRLLTQAN NHFDDTVKID GQSLDLGKDL EQVMMDNLDC  60
   61 TDIFDSDIAS QKHLTLESLF NDEHNTDSST LLEMQRSAND SLVGIDLDRH KKGYTGKASL 120
  121 DKSTNQNNVH K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [132-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDKEQKNYKI DKPTIKKKKS LLKTTNEPML SPASLSPSSS LASSDANESH LKIESMITDI  60
   61 TSKIDSARQD IVSATKPAKF TNEFTISQIS EMKARIINTH KLLLNFNFIK EGYARSCIQL 120
  121 KKSMDSLKDS EIHRAHLLVE NDDLKQQILE LTQKLNEKSS KES

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle