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View Structure Prediction Details

Protein: ATC1
Organism: Saccharomyces cerevisiae
Length: 294 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATC1.

Description E-value Query
Range
Subject
Range
ATC1 - Nuclear protein, possibly involved in regulation of cation stress responses and/or in the establishm...
LIC4_YEAST - Protein ATC1/LIC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATC1 PE=1 SV=1
0.0 [1..294] [1..294]
gi|5531282 - gi|5531282|emb|CAB50895.1| ATC1 homologue [Kluyveromyces lactis]
4.0E-49 [163..289] [2..126]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTNQSNPNT DLTDDANIEH TLHRLLTQAN NHFDDTVKID GQSLDLGKDL EQVMMDNLDC  60
   61 TDIFDSDIAS QKHLTLESLF NDEHNTDSST LLEMQRSAND SLVGIDLDRH KKGYTGKASL 120
  121 DKSTNQNNVH K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [132-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDKEQKNYKI DKPTIKKKKS LLKTTNEPML SPASLSPSSS LASSDANESH LKIESMITDI  60
   61 TSKIDSARQD IVSATKPAKF TNEFTISQIS EMKARIINTH KLLLNFNFIK EGYARSCIQL 120
  121 KKSMDSLKDS EIHRAHLLVE NDDLKQQILE LTQKLNEKSS KES

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle