YRC Public Data Repository - Protein Structure Prediction

Protein:	GIR2
Organism:	Saccharomyces cerevisiae
Length:	265 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GIR2.

Description	E-value	Query Range	Subject Range
gi\|190404892 - gi\|190404892\|gb\|EDV08159.1\| protein GIR2 [Saccharomyces cerevisiae RM11-1a] GIR2 - Highly-acidic cytoplasmic RWD domain-containing protein of unknown function; interacts with Rbg1p an... gi\|151942136 - gi\|151942136\|gb\|EDN60492.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|207346662 - gi\|207346662\|gb\|EDZ73095.1\| YDR152Wp-like protein [Saccharomyces cerevisiae AWRI1631] GIR2_YEAST - Protein GIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIR2 PE=1 SV=1	1.0E-65	[1..265]	[1..265]
gi\|5138918 - gi\|5138918\|gb\|AAD40376.1\| PTD013 [Homo sapiens]	3.0E-41	[2..251]	[3..209]
RWDD1_RAT - RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1	4.0E-41	[2..251]	[3..209]
gi\|16768964 - gi\|16768964\|gb\|AAL28701.1\| LD12396p [Drosophila melanogaster]	2.0E-39	[2..253]	[4..212]
gi\|7305017, gi\|6... - gi\|7305017\|ref\|NP_038747.1\| eukaryotic translation initiation factor 2 alpha kinase 4 [Mus musculus]...	7.0E-38	[2..178]	[18..180]
gi\|23198350, gi\|... - pir\|\|C96556 unknown protein [imported] - Arabidopsis thaliana, gi\|23198350\|gb\|AAN15702.1\| unknown p...	1.0E-37	[2..234]	[3..199]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-36	[2..190]	[9..189]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKEEQKQE LEVLESIYPD ELRIINDEYP KIKFEVAIKL ELDTGDSTSV LTKEHTIIAE  60
   61 FKLPENYPDE PCLISLEAQE VALNDNEEDN EEDEDEVEYD DHGNKVLKKF EN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPDLISFKGY LPELTVQLES QIETDMLLGM QMCFALISSI KERCEQWYSE QLNKLEKQYE  60
   61 LEAQEREKKE QAKFHGTKVT RESYLEWRSK FRQELKLDER DQVRRMKAHH GKLTGKQMFE 120
  121 QGVVGTGDEY MEEDDASVDD VAKGLAKTEI ANQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.901	0.281	cytoplasm	a.25.1	Ferritin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits