| Protein: | GIR2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 265 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GIR2.
| Description | E-value | Query Range |
Subject Range |
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1.0E-65 | [1..265] | [1..265] |
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3.0E-41 | [2..251] | [3..209] |
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4.0E-41 | [2..251] | [3..209] |
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2.0E-39 | [2..253] | [4..212] |
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7.0E-38 | [2..178] | [18..180] |
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1.0E-37 | [2..234] | [3..199] |
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2.0E-36 | [2..190] | [9..189] |
|
Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MDYKEEQKQE LEVLESIYPD ELRIINDEYP KIKFEVAIKL ELDTGDSTSV LTKEHTIIAE 60
61 FKLPENYPDE PCLISLEAQE VALNDNEEDN EEDEDEVEYD DHGNKVLKKF EN
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.502 | 0.389 | cytoplasm | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.509 | 0.000 | cytoplasm | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.511 | 0.000 | cytoplasm | d.236.1 | DNA-binding protein Tfx |
| View | Download | 0.570 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.561 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.473 | N/A | N/A | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.460 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.434 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.394 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.386 | N/A | N/A | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
| View | Download | 0.383 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.364 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.349 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.327 | N/A | N/A | b.1.14 | Invasin/intimin cell-adhesion fragments |
| View | Download | 0.315 | N/A | N/A | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.315 | N/A | N/A | d.80.1 | Tautomerase/MIF |
| View | Download | 0.298 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.298 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.298 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.294 | N/A | N/A | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.289 | N/A | N/A | b.1.2 | Fibronectin type III |
| View | Download | 0.289 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.277 | N/A | N/A | d.70.1 | Yest killer toxins |
| View | Download | 0.269 | N/A | N/A | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.268 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.258 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.255 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.246 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.244 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.235 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.227 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.226 | N/A | N/A | d.101.1 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
| View | Download | 0.218 | N/A | N/A | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.217 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.210 | N/A | N/A | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.205 | N/A | N/A | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.203 | N/A | N/A | d.60.1 | Probable bacterial effector-binding domain |
| View | Download | 0.203 | N/A | N/A | d.20.1 | UBC-like |
| View | Download | 0.201 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
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Region A: Residues: [113-265] |
1 11 21 31 41 51
| | | | | |
1 LPDLISFKGY LPELTVQLES QIETDMLLGM QMCFALISSI KERCEQWYSE QLNKLEKQYE 60
61 LEAQEREKKE QAKFHGTKVT RESYLEWRSK FRQELKLDER DQVRRMKAHH GKLTGKQMFE 120
121 QGVVGTGDEY MEEDDASVDD VAKGLAKTEI ANQ
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.901 | 0.281 | cytoplasm | a.25.1 | Ferritin-like |
| View | Download | 0.840 | 0.000 | cytoplasm | a.63.1 | Apolipophorin-III |
| View | Download | 0.665 | 0.000 | cytoplasm | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.766 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.543 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.539 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.531 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.525 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.515 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.515 | N/A | N/A | a.118.16 | Testis/brain RNA-binding protein (TB-RBP) |
| View | Download | 0.511 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.501 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.482 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.458 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.454 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.449 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.448 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.440 | N/A | N/A | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.427 | N/A | N/A | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.396 | N/A | N/A | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.391 | N/A | N/A | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.389 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.381 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.380 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.368 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.364 | N/A | N/A | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.327 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.321 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.319 | N/A | N/A | d.124.1 | Ribonuclease Rh-like |
| View | Download | 0.318 | N/A | N/A | d.124.1 | Ribonuclease Rh-like |
| View | Download | 0.306 | N/A | N/A | d.123.1 | Sporulation responce regulatory protein Spo0B |
| View | Download | 0.302 | N/A | N/A | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.299 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.292 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.287 | N/A | N/A | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.287 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.287 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.285 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.285 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.277 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.277 | N/A | N/A | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.277 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.274 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.270 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.263 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.263 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.262 | N/A | N/A | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.255 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.246 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.242 | N/A | N/A | d.123.1 | Sporulation responce regulatory protein Spo0B |
| View | Download | 0.238 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.232 | N/A | N/A | d.90.1 | NADH oxidase/flavin reductase |
| View | Download | 0.226 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.225 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.225 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.225 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.224 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.222 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.218 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.217 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.215 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.213 | N/A | N/A | a.7.4 | Smac/diablo |
| View | Download | 0.213 | N/A | N/A | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.212 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.211 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.211 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.209 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.206 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.204 | N/A | N/A | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.201 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
