| Protein: | TMA64 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 565 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMA64.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..557] | [1..557] |
|
|
0.0 | [1..565] | [1..583] |
|
|
0.0 | [1..565] | [1..570] |
|
|
0.0 | [1..559] | [1..554] |
|
|
0.0 | [1..564] | [1..516] |
|
Region A: Residues: [1-59] |
1 11 21 31 41 51
| | | | | |
1 MFKKEPHIKA LSNLKNSERK KLLQTFQKQT NNEEYSFRTS TIKQTNFNGQ KSVGTVYTD
|
| Detection Method: |  |
| Confidence: | 3.69897 |
| Match: | 1k8wA_ |
| Description: | Pseudouridine synthase II TruB, C-terminal domain; Pseudouridine synthase II TruB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [60-193] |
1 11 21 31 41 51
| | | | | |
1 ENNTPILFKE KHKEQLFPTV YSCWEYPALL PIVLTHGFVI EEHLFNGANL MISGSIPPFD 60
61 PRCKIGTLCG IASKQAPETV LAIGIVELDL PSFDKVIGET GVAVKIIHHF NDGLSKVFKM 120
121 KLEPPFVLST QSKD
|
| Detection Method: | |
| Confidence: | 12.30103 |
| Match: | 1it7A_ |
| Description: | Archaeosine tRNA-guanine transglycosylase, C3 domain; Archaeosine tRNA-guanine transglycosylase, N-terminal domain; Archaeosine tRNA-guanine transglycosylase, C2 domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [194-436] |
1 11 21 31 41 51
| | | | | |
1 NNISSKQIES SEQIKAVEKE QEDVKEASVD VEEIAEVLDH FTVSDVDYFI TRALYYTLTQ 60
61 DKGLELPISA SNFISNHIMR NLPPIDHNEV NVKKTSWKKS AKFLKHFEKE GFLKLKGKGD 120
121 DLTIVGKNTD KDELKNFVPY KLGCSKSATE SRESTTSKEK TSGMMYSLTL YKPFNLAKDL 180
181 LKEVNLASHT YYTSQDIRSA VSQYISVKNL ADTKDKGKVI MDDLLFDMVN KKKKVLNASR 240
241 IIA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [437-565] |
1 11 21 31 41 51
| | | | | |
1 RGEILHPLLT NNFTEFYQIF KSDDTLLFKA PMKGSLPHIK IITEMKIGRK VITRVSNFEV 60
61 FQVDPESLAA DLRKICSGST TISESQTFKC AEVQVQGPHG QSIIDHLNKL GIPSKWIDFE 120
121 NKLKKKKRK
|
| Detection Method: | |
| Confidence: | 10.0 |
| Match: | 1d1rA |
| Description: | YciH |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.578545460864021 | bayes_pls_golite062009 |
