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View Structure Prediction Details

Protein: SES1
Organism: Saccharomyces cerevisiae
Length: 462 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SES1.

Description E-value Query
Range
Subject
Range
SYS_STRPY - (Q99YE2) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS)
gi|13622796, gi|... - gi|15675591|ref|NP_269765.1| seryl-tRNA synthetase [Streptococcus pyogenes M1 GAS], gi|13622796|gb|A...
SYS_STRP1 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M1 GN=serS PE=3 SV=1
gi|71911296, gi|... - gi|71911296|ref|YP_282846.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS5005], gi|71854078|gb...
0.0 [1..443] [1..424]
gi|25293165 - pir||D97918 serine-tRNA ligase (EC 6.1.1.11) [imported] - Streptococcus pneumoniae (strain R6)
gi|15902416, gi|... - gi|15902416|ref|NP_357966.1| seryl-tRNA synthetase [Streptococcus pneumoniae R6], gi|15457932|gb|AAK...
0.0 [1..443] [22..445]
SYS_STRP8 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=serS PE=3 SV=1
SYS_STRP6 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M6 GN=serS PE=3 SV=1
SYS_STRP8 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M18 GN=serS PE=3 SV=1
SYS_STRP6 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=serS ...
0.0 [1..443] [1..424]
gi|183577467, gi... - gi|183577467|gb|EDT97995.1| seryl-tRNA synthetase [Streptococcus pneumoniae MLV-016], gi|168576870|r...
gi|149023698, gi... - gi|149023698|ref|ZP_01836178.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72], gi|14792...
SYS_STRPN - Serine--tRNA ligase OS=Streptococcus pneumoniae GN=serS PE=3 SV=1
SYS_STRPN - Serine--tRNA ligase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=serS PE=...
gi|147757389, gi... - gi|148996814|ref|ZP_01824532.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70], gi|14775...
SYS_STRZT - Serine--tRNA ligase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=serS PE=3 SV=1
gi|242246026, gi... - gi|242246026|ref|ZP_04800463.1| seryl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A], gi|242...
0.0 [1..443] [1..424]
SYS_PSEAE - Seryl-tRNA synthetase OS=Pseudomonas aeruginosa GN=serS PE=3 SV=1
SYS_PSEAE - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) ...
gi|254235598, gi... - gi|84320581|ref|ZP_00968954.1| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa C3719], gi|254...
gi|194552030, gi... - gi|84326939|ref|ZP_00974963.1| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa 2192], gi|2542...
SYS_PSEA8 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain LESB58) GN=serS PE=3 SV=1
SYS_PSEAB - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=serS PE=3 SV=1
gi|107102134 - gi|107102134|ref|ZP_01366052.1| hypothetical protein PaerPA_01003183 [Pseudomonas aeruginosa PACS2]
0.0 [1..441] [1..425]
SYS_ECO7I - Serine--tRNA ligase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=serS PE=3 SV=1
SYS_ECOLU - Serine--tRNA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=serS PE=3 SV=1
SYS_ECO5E - Serine--tRNA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=serS PE=3 SV=1
SYS_ECOSE - Serine--tRNA ligase OS=Escherichia coli (strain SE11) GN=serS PE=3 SV=1
SYS_ECO27 - Serine--tRNA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=serS PE=3 SV=1
gi|217326397, gi... - gi|217326397|ref|ZP_03442481.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588], gi|21...
SYS_ECO8A - Serine--tRNA ligase OS=Escherichia coli O8 (strain IAI1) GN=serS PE=3 SV=1
SYS_ECO45 - Serine--tRNA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=serS PE=3 SV=1
SYS_ECO81 - Serine--tRNA ligase OS=Escherichia coli O81 (strain ED1a) GN=serS PE=3 SV=1
SYS_ECO55 - Serine--tRNA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=serS PE=3 SV=1
sp|B7UMY4|SYS_ECO27 - Seryl-tRNA synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=serS PE=3 SV=1
SYS_SHISS - Serine--tRNA ligase OS=Shigella sonnei (strain Ss046) GN=serS PE=3 SV=1
SYS_SHIBS - Serine--tRNA ligase OS=Shigella boydii serotype 4 (strain Sb227) GN=serS PE=3 SV=1
gi|75257392, gi|... - gi|75257392|ref|ZP_00728908.1| COG0172: Seryl-tRNA synthetase [Escherichia coli E22], gi|193064674|r...
gi|188492608, gi... - gi|75512046|ref|ZP_00734631.1| COG0172: Seryl-tRNA synthetase [Escherichia coli 53638], gi|188492608...
gi|194438706, gi... - gi|83585836|ref|ZP_00924476.1| COG0172: Seryl-tRNA synthetase [Escherichia coli 101-1], gi|194438706...
gi|13360437, gi|... - gi|15830232|ref|NP_309005.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai], gi|1336043...
gi|189372720, gi... - gi|189372720|gb|EDU91136.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC869], gi|16878732...
SYS_ECO24 - Serine--tRNA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=serS PE=3 SV=1
SYS_ECOL5 - Serine--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=serS PE=3 SV=1
gi|189376450, gi... - gi|189376450|gb|EDU94866.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC508], gi|16880142...
SYS_SHIF8 - Serine--tRNA ligase OS=Shigella flexneri serotype 5b (strain 8401) GN=serS PE=3 SV=1
SYS_ECODH - Serine--tRNA ligase OS=Escherichia coli (strain K12 / DH10B) GN=serS PE=3 SV=1
SYS_ECOSM - Serine--tRNA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=serS PE=3 SV=1
gi|191167614, gi... - gi|75229261|ref|ZP_00715826.1| COG0172: Seryl-tRNA synthetase [Escherichia coli B7A], gi|191167614|r...
gi|195939556 - gi|195939556|ref|ZP_03084938.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
gi|75240970, gi|... - gi|75240970|ref|ZP_00724859.1| COG0172: Seryl-tRNA synthetase [Escherichia coli F11], gi|191172133|r...
gi|208808989, gi... - gi|208808989|ref|ZP_03251326.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206], gi|208...
SYS_ECOHS - Serine--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=serS PE=3 SV=1
gi|89107743, gi|... - gi|89107743|ref|AP_001523.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine [E...
gi|208732184, gi... - gi|208815536|ref|ZP_03256715.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045], gi|208...
gi|194413610, gi... - gi|75210418|ref|ZP_00710574.1| COG0172: Seryl-tRNA synthetase [Escherichia coli B171], gi|194428395|...
SYS_ECOUT - Serine--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=serS PE=3 SV=1
gi|208822033, gi... - gi|208822033|ref|ZP_03262352.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042], gi|208...
gi|168752125, gi... - gi|188013954|gb|EDU52076.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113], gi|1687521...
gi|189355936, gi... - gi|189355936|gb|EDU74355.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401], gi|1687569...
gi|168762973, gi... - gi|189366796|gb|EDU85212.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501], gi|1687629...
gi|189361156, gi... - gi|189361156|gb|EDU79575.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486], gi|1687698...
gi|168776256, gi... - gi|187768390|gb|EDU32234.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196], gi|1687762...
EG10947 - seryl-tRNA synthetase / Serine--tRNA ligase; serine hydroxamate resistance
gi|168783803, gi... - gi|188998912|gb|EDU67898.1| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076], gi|1687838...
SYS_ECOLI - Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) - Escherichia coli
SYS_ECOL6 - Serine--tRNA ligase OS=Escherichia coli O6 GN=serS PE=3 SV=1
SYS_SHIFL - Serine--tRNA ligase OS=Shigella flexneri GN=serS PE=3 SV=1
gi|24112268, gi|... - gi|24112268|ref|NP_706778.1| seryl-tRNA synthetase [Shigella flexneri 2a str. 301], gi|24051120|gb|A...
gi|254591493, gi... - gi|254792093|ref|YP_003076930.1| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serin...
SYS_ECOL6 - Serine--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=serS PE=3 SV=1
gi|254161007, gi... - gi|254161007|ref|YP_003044115.1| seryl-tRNA synthetase [Escherichia coli B str. REL606], gi|25397290...
gi|30040626, gi|... - gi|30062380|ref|NP_836551.1| seryl-tRNA synthetase [Shigella flexneri 2a str. 2457T], gi|30040626|gb...
gi|253325122, gi... - gi|254287815|ref|YP_003053563.1| seryl-tRNA synthetase [Escherichia coli BL21(DE3)], gi|253977122|gb...
SYS_ECO57 - Serine--tRNA ligase OS=Escherichia coli O157:H7 GN=serS PE=3 SV=1
gi|242376708, gi... - gi|251784435|ref|YP_002998739.1| hypothetical protein B21_00904 [Escherichia coli BL21], gi|24237670...
EG10947 - seryl-tRNA synthetase / Serine--tRNA ligase; serine hydroxamate resistance
SYS_ECOBW - Serine--tRNA ligase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=serS PE=3 SV=1
gi|226898327, gi... - gi|237707117|ref|ZP_04537598.1| seryl-tRNA synthetase [Escherichia sp. 3_2_53FAA], gi|226898327|gb|E...
gi|227838892, gi... - gi|227884140|ref|ZP_04001945.1| seryl-tRNA synthetase [Escherichia coli 83972], gi|227838892|gb|EEJ4...
SYS_ECOLC - Serine--tRNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=serS PE=3 SV=1
SYS_ECOK1 - Serine--tRNA ligase OS=Escherichia coli O1:K1 / APEC GN=serS PE=3 SV=1
gi|124531982, gi... - gi|124531982|ref|ZP_01702041.1| seryl-tRNA synthetase [Escherichia coli B], gi|124498244|gb|EAY45765...
0.0 [1..441] [1..429]
gi|25293153 - pir||H85614 hypothetical protein serS [imported] - Escherichia coli (strain O157:H7, substrain EDL9...
gi|12514055, gi|... - gi|15800756|ref|NP_286770.1| seryl-tRNA synthetase [Escherichia coli O157:H7 EDL933], gi|12514055|gb...
0.0 [1..441] [1..429]
SYS_LACLA - Seryl-tRNA synthetase OS=Lactococcus lactis subsp. lactis GN=serS PE=3 SV=1
SYS_LACLA - Serine--tRNA ligase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=serS PE=3 SV=1
0.0 [1..441] [1..422]
gi|221179032, gi... - gi|221201182|ref|ZP_03574222.1| seryl-tRNA synthetase [Burkholderia multivorans CGD2M], gi|221179032...
SYS_BURM1 - Serine--tRNA ligase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=serS PE=3 SV=1
gi|221213643, gi... - gi|221213643|ref|ZP_03586617.1| seryl-tRNA synthetase [Burkholderia multivorans CGD1], gi|221166432|...
SYS_BURCE - Serine--tRNA ligase OS=Burkholderia cepacia GN=serS PE=3 SV=1
gi|221206364, gi... - gi|221206364|ref|ZP_03579377.1| seryl-tRNA synthetase [Burkholderia multivorans CGD2], gi|221173673|...
0.0 [1..441] [1..426]
gi|167550365, gi... - gi|205324587|gb|EDZ12426.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saint...
gi|205327478, gi... - gi|205327478|gb|EDZ14242.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar 4,[5]...
gi|238913262 - gi|238913262|ref|ZP_04657099.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T...
lcl|NC_016856.1_... - [gene=serS] [protein=seryl-tRNA synthetase] [protein_id=YP_005236678.1] [location=1002151..1003443]
SYS_SALPB - Serine--tRNA ligase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=serS PE=3 SV=1
SYS_SALEP - Serine--tRNA ligase OS=Salmonella enteritidis PT4 (strain P125109) GN=serS PE=3 SV=1
SYS_SALTI - Serine--tRNA ligase OS=Salmonella typhi GN=serS PE=3 SV=1
gi|213428591 - gi|213428591|ref|ZP_03361341.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T...
SYS_SALCH - Serine--tRNA ligase OS=Salmonella choleraesuis GN=serS PE=3 SV=1
gi|213580909 - gi|213580909|ref|ZP_03362735.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T...
gi|213609744 - gi|213609744|ref|ZP_03369570.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T...
gi|16759834 - gi|16759834|ref|NP_455451.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typh...
SYS_SALPK - Serine--tRNA ligase OS=Salmonella paratyphi A (strain AKU_12601) GN=serS PE=3 SV=1
SYS_SALDC - Serine--tRNA ligase OS=Salmonella dublin (strain CT_02021853) GN=serS PE=3 SV=1
SYS_SALTY - Serine--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=serS PE=3 SV=...
gi|200390080, gi... - gi|200390080|ref|ZP_03216691.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar V...
gi|29138023, gi|... - gi|29142393|ref|NP_805735.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typh...
SYS_SALG2 - Serine--tRNA ligase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=serS PE=3 SV=1
SYS_SALCH - Serine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67) GN=serS PE=3 SV=1
SYS_SALNS - Serine--tRNA ligase OS=Salmonella newport (strain SL254) GN=serS PE=3 SV=1
SYS_SALPA - Serine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=serS PE=3 SV=1
gi|194457722, gi... - gi|194471358|ref|ZP_03077342.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar K...
SYS_SALA4 - Serine--tRNA ligase OS=Salmonella agona (strain SL483) GN=serS PE=3 SV=1
SYS_SALTY - Serine--tRNA ligase OS=Salmonella typhimurium GN=serS PE=3 SV=1
gi|197241068, gi... - gi|197262813|ref|ZP_03162887.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar S...
gi|168230857, gi... - gi|205334663|gb|EDZ21427.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentu...
gi|205347703, gi... - gi|205347703|gb|EDZ34334.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar...
gi|168466548, gi... - gi|195631016|gb|EDX49602.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newpo...
gi|205340753, gi... - gi|205340753|gb|EDZ27517.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Welte...
gi|213851472 - gi|213851472|ref|ZP_03381370.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T...
gi|214003461 - gi|214003461|ref|ZP_03414196.1| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T...
SYS_SALTI - Seryl-tRNA synthetase OS=Salmonella typhi GN=serS PE=3 SV=1
SYS_SALTY - Seryl-tRNA synthetase OS=Salmonella typhimurium GN=serS PE=3 SV=1
SYS_SALPA - Serine--tRNA ligase OS=Salmonella paratyphi A GN=serS PE=3 SV=1
SYS_SALPB - Seryl-tRNA synthetase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=serS PE=3 SV=1
SYS_SALCH - Seryl-tRNA synthetase OS=Salmonella choleraesuis GN=serS PE=3 SV=1
0.0 [1..441] [1..429]

Back

Predicted Domain #1
Region A:
Residues: [1-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDINQFIED KGGNPELIRQ SQKARNASVE IVDEIISDYK DWVKTRFELD ELNKKFNKLQ  60
   61 KDIGLKFKNK EDASGLLAEK EKLTQQKKEL TEKEQQEDKD LKKKVFQVGN IVHPSVVVSN 120
  121 DEENNELVRT WKPEDLEAVG PIASVTGKPA SLSHHEILLR LDGYDPDRGV KICGHRGYFF 180
  181 RNYGVFLNQA LINYGLQFLA AKGYIPLQAP VMMNKELMSK TAQLSEFDEE LYKVIDGEDE 240
  241 KYLIATSEQP ISAYHSGEWF EKPQEQLPIH YVGYSSCFRR EAGSHGKDAW GVFRVHAFEK 300
  301 IEQFVITEPE KSWEEFEKMI SYSEEFYKSL KLPYRIVGIV SGELNNAAAK KYDLEAWFPY 360
  361 QKEYKELVSC SNCTDYQSRN LEIRCGIKKM GDREKKYVHC LNSTLAATQR ALCCILENYQ 420
  421 TEDGLVVPEV LRKYIPGEPE FLPFVNELPK NSTSSKDKKK KN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 556.502279
Match: 1serA_
Description: Seryl-tRNA synthetase (SerRS)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle