YRC Public Data Repository - Protein Structure Prediction

Protein:	GCV1
Organism:	Saccharomyces cerevisiae
Length:	400 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCV1.

Description	E-value	Query Range	Subject Range
gi\|190405007 - gi\|190405007\|gb\|EDV08274.1\| glycine decarboxylase complex T subunit [Saccharomyces cerevisiae RM11-1... GCV1 - T subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine... gi\|151942007 - gi\|151942007\|gb\|EDN60363.1\| glycine decarboxylase complex T subunit [Saccharomyces cerevisiae YJM789... GCST_YEAST - Aminomethyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GC...	0.0	[1..400]	[1..400]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[1..400]	[1..400]
GCST_PEA - Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2	0.0	[5..399]	[22..406]
GCST_SOLTU - Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1	0.0	[5..399]	[21..405]
GCST_FLAAN - Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1	0.0	[2..399]	[23..405]
GCST_FLAPR - Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1	0.0	[5..399]	[21..405]
GCST_FLATR - Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1	0.0	[5..399]	[21..405]
GCST_MESCR - Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1	0.0	[5..399]	[22..406]

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Predicted Domain #1

Region A:
Residues: [1-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIIKKIVFK RFNSTLKKTA LHDLHVSLGG TMVPYAGYSM PVLYKGQTHI ESHNWTRTNA  60
   61 GLFDVSHMLQ SKLSGPHSVK FLQRVTPTDF NALPVGSGTL SVLLNPQGGV VDDTIITKEN 120
  121 DDNEFYIVTN AGCAERDTEF FHDELQNGST LDCQWKIIEG RSLLALQGPK AKDVLEPLLS 180
  181 KTAPGKDLKE LFFGQRHEFA LKDGSLVQIA RGGYTGEDGF EISIANEKAV EFAEQLLANP 240
  241 VMKPIGLAAR DSLRLEAGMC LYGHELDESI TPVEAALNWV ISKSRRDLVD QKYWFNGYAK 300
  301 IMDQLNNKTY SKVRVGFKYL KKGPAARNGV KIFLPDAETE VGLVTSGSAS PTLNNINIGQ 360
  361 AYVQKGYHKK GTKLLVQVRN KFYPIELAKM PLVPTHYYKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	186.19382
Match:	PF01571
Description:	Glycine cleavage T-protein (aminomethyl transferase)

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits