YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL11
Organism:	Saccharomyces cerevisiae
Length:	249 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL11.

Description	E-value	Query Range	Subject Range
gi\|207347134 - gi\|207347134\|gb\|EDZ73419.1\| YDL202Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405194 - gi\|190405194\|gb\|EDV08461.1\| 60S ribosomal protein L11, mitochondrial precursor [Saccharomyces cerevi... MRPL11 - Mitochondrial ribosomal protein of the large subunit gi\|151941805 - gi\|151941805\|gb\|EDN60161.1\| YmL11 [Saccharomyces cerevisiae YJM789] RM11_YEAST - 54S ribosomal protein L11, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	8.0E-68	[1..249]	[1..249]
gi\|25525751 - gi\|25525751\|pir\|\|AE3345 LSU ribosomal protein L10P [imported] - Brucella melitensis (strain 16M) gi\|17982684, gi\|... - gi\|17987030\|ref\|NP_539664.1\| 50S ribosomal protein L10 [Brucella melitensis 16M], gi\|17982684\|gb\|AAL...	4.0E-38	[35..232]	[20..206]
RL10_RHIME - 50S ribosomal protein L10 OS=Rhizobium meliloti (strain 1021) GN=rplJ PE=3 SV=1 RL10_RHIME - 50S ribosomal protein L10 OS=Rhizobium meliloti GN=rplJ PE=3 SV=1	2.0E-37	[47..232]	[3..170]
gi\|34580867, gi\|... - gi\|34580867\|ref\|ZP_00142347.1\| 50S ribosomal protein L10 [Rickettsia sibirica 246], gi\|28262252\|gb\|E... RL10_RICCN - 50S ribosomal protein L10 OS=Rickettsia conorii GN=rplJ PE=3 SV=1 RL10_RICCN - 50S ribosomal protein L10 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=rplJ PE=3 SV=1 RL10_RICAE - 50S ribosomal protein L10 OS=Rickettsia africae (strain ESF-5) GN=rplJ PE=3 SV=1	3.0E-37	[47..231]	[3..169]
RL10_RHILO - 50S ribosomal protein L10 OS=Rhizobium loti GN=rplJ PE=3 SV=1 RL10_RHILO - 50S ribosomal protein L10 OS=Rhizobium loti (strain MAFF303099) GN=rplJ PE=3 SV=1	6.0E-37	[47..232]	[3..170]
RL10_RICPR - 50S ribosomal protein L10 OS=Rickettsia prowazekii (strain Madrid E) GN=rplJ PE=3 SV=1 RL10_RICPR - 50S ribosomal protein L10 OS=Rickettsia prowazekii GN=rplJ PE=3 SV=1	8.0E-37	[47..230]	[3..168]
RL10_STRGR - 50S ribosomal protein L10 OS=Streptomyces griseus GN=rplJ PE=3 SV=1 RL10_STRGG - 50S ribosomal protein L10 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=r...	7.0E-36	[47..245]	[3..183]
RL10_BACHD - 50S ribosomal protein L10 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RL10_BACHD - 50S ribosomal protein L10 OS=Bacillus halodurans GN=rplJ PE=3 SV=1	3.0E-35	[45..236]	[2..165]
RL10_STAAN - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain N315) GN=rplJ PE=1 SV=1 RL10_STAAW - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain MW2) GN=rplJ PE=3 SV=1 RL10_STAAM - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplJ PE=3 SV=1 RL10_STAA2 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain JH1) GN=rplJ PE=3 SV=1 RL10_STAA9 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain JH9) GN=rplJ PE=3 SV=1 gi\|227557413, gi... - gi\|227557413\|ref\|ZP_03987460.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus MN8],... gi\|227852233, gi... - gi\|227899470\|ref\|ZP_04017275.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus TCH60... RL10_STAAT - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplJ PE=3 SV=1 gi\|251802990, gi... - gi\|251813488\|ref\|ZP_04827961.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus TCH70... RL10_STAAC - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain COL) GN=rplJ PE=3 SV=1 gi\|253315649 - gi\|253315649\|ref\|ZP_04838862.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus str. ... gi\|253731144, gi... - gi\|253731144\|ref\|ZP_04865309.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus USA30... gi\|253729476, gi... - gi\|253732547\|ref\|ZP_04866712.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus TCH13... gi\|255005333 - gi\|255005333\|ref\|ZP_05143934.2\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus Mu50-... gi\|269202162\|ref... - 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus ED98] RL10_STAA8 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplJ PE=3 SV=1 RL10_STAA3 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain USA300) GN=rplJ PE=3 SV=1 RL10_STAAB - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplJ PE=3 SV=1 RL10_STAAR - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain MRSA252) GN=rplJ PE=3 SV=1 gi\|87126714\|gb\|A... - ribosomal protein L10 [Staphylococcus aureus subsp. aureus USA300], ribosomal protein L10 [Staphyloc... gi\|221139612 - gi\|221139612\|ref\|ZP_03564411.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus str. ... gi\|25295127 - pir\|\|E89821 50S ribosomal protein L10 [imported] - Staphylococcus aureus (strain N315) gi\|221141024 - gi\|221141024\|ref\|ZP_03565517.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus str. ... RL10_STAA1 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplJ PE=3 SV=1 RL10_STAAE - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain Newman) GN=rplJ PE=3 SV=1	5.0E-35	[43..233]	[1..163]
RL10_THEMA - 50S ribosomal protein L10 OS=Thermotoga maritima GN=rplJ PE=1 SV=2 RL10_THEMA - 50S ribosomal protein L10 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) G...	5.0E-35	[45..233]	[2..179]

Back

Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQLRFMPGW VPRNGFFGLK ETIGTVHKRF YALASEQPSR KTVKPLDSRK TFLIDTYKHL  60
   61 MENSSMIFFV HYNNLSKTED HHFRFKIKQT GGKLTKVRNN LFEVYLRNSH LPDPCGFVKR 120
  121 KEQNWKHPLL PLLKGPTATI TYEDTNPQQV AKLLKVLQSA QDKLMVIGAK VENEVLNVEK 180
  181 INTFKTLPTK PEMQSQLVSV LQMLSGLGLV RTLENSSNAL YLTLKSHNDN QKPKEDVEST 240
  241 TDAESKGSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.154902
Match:	1jj2G_
Description:	Ribosomal protein L10
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.21399440705185	bayes_pls_golite062009
structural molecule activity	8.64272477066313	bayes_pls_golite062009
binding	1.3283396714818	bayes_pls_golite062009
protein binding	0.622920819709955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: