| Protein: | NRP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 719 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..719] | [1..719] |
|
|
0.0 | [21..457] | [39..432] |
|
|
2.0E-52 | [373..600] | [2246..2460] |
|
|
1.0E-37 | [204..387] | [250..410] |
|
|
3.0E-33 | [376..611] | [2190..2411] |
|
|
1.0E-32 | [379..619] | [236..481] |
|
|
1.0E-29 | [384..637] | [1051..1315] |
|
Region A: Residues: [1-173] |
1 11 21 31 41 51
| | | | | |
1 MHYVVLELQV AHLPDTPKDQ CRIANIAFQI VNAETLVCHY GTNSLPSIEV NGTTKSLESA 60
61 MVQLDKDIHD VIGNDDFVLV SLYSTWHIRV TLPRQARDDG FILTSYLQHP KVFDLWKEFD 120
121 RWCVNHPEIL GQKKAISNNN CNTKSISINA AKNTKDLDEI VRILEVSIPT EEA
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.396 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.373 | d.95.2 | Homing endonucleases |
| View | Download | 0.396 | c.55.4 | Translational machinery components |
| View | Download | 0.316 | d.112.1 | Phoshotransferase/anion transport protein |
| View | Download | 0.481 | d.58.22 | TRADD, N-terminal domain |
| View | Download | 0.276 | b.51.1 | ValRS/IleRS/LeuRS editing domain |
| View | Download | 0.272 | d.202.1 | Transcription factor NusA, N-terminal domain |
| View | Download | 0.246 | d.110.4 | SNARE-like |
| View | Download | 0.244 | d.3.1 | Cysteine proteinases |
| View | Download | 0.241 | d.58.26 | GHMP Kinase, C-terminal domain |
|
Region A: Residues: [174-317] |
1 11 21 31 41 51
| | | | | |
1 GSVPEIYSLL KRTTDILIQL HKKCTSPEDM ESVLTKPYDS HTDIRAFLQE KSKILYMNNL 60
61 PPDTTQSELE SWFTQYGVRP VGFWTVKNIV EDTSNVNNNW SLNNSPYVED QDSISGFVVF 120
121 QTHEEATEVL ALNGRSILSN LANT
|
| Detection Method: | |
| Confidence: | 2.69897 |
| Match: | 1fxlA_ |
| Description: | Hu antigen D (Hud) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [318-463] |
1 11 21 31 41 51
| | | | | |
1 KQPRVVEHVL ELQPSSTGVL DKAQEILSPF PQSKNKPRPG DWNCPSCGFS NFQRRTACFR 60
61 CSFPAPSNSQ IHTANSNNNV NSSRNNLNNR VNSGSSSNIS NTAANHPYGA PEFNMIANNT 120
121 PAALTYNRAH FPAITPLSRQ NSLNMA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.262 | 0.000 | cytoplasm | d.190.1 | Chorismate lyase |
|
Region A: Residues: [464-582] |
1 11 21 31 41 51
| | | | | |
1 PSNSGSPIII ADHFSGNNNI APNYRYNNNI NNNNNNINNM TNNRYNINNN INGNGNGNGN 60
61 NSNNNNNHNN NHNNNHHNGS INSNSNTNNN NNNNNGNNSN NCNSNIGMGG CGSNMPFRA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [583-719] |
1 11 21 31 41 51
| | | | | |
1 GDWKCSTCTY HNFAKNVVCL RCGGPKSISG DASETNHYID SSTFGPASRT PSNNNISVNT 60
61 NGGSNAGRTD GNDNKGRDIS LMEFMSPPLS MATKSMKEGD GNGSSFNEFK SDKANVNFSN 120
121 VGDNSAFGNG FNSSIRW
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
