YRC Public Data Repository - Protein Structure Prediction

Protein:	RPP1A
Organism:	Saccharomyces cerevisiae
Length:	106 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPP1A.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	114.0	[0..2]	[106..3]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	105.0	[0..3]	[106..5]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	101.0	[0..3]	[106..5]
gi\|109084446 - gi\|109084446\|ref\|XP_001095290.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 [Macaca mulat...	100.0	[0..3]	[106..140]
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	99.0	[0..5]	[106..1]
gi\|4239713 - gi\|4239713\|emb\|CAA72658.1\| acidic ribosomal protein [Ceratitis capitata]	98.0	[0..1]	[106..1]
gi\|539412, gi\|227678 - gi\|539412\|pir\|\|A53221 acidic ribosomal protein P1 - hydromedusa (Polyorchis penicillatus), gi\|227678...	98.0	[0..2]	[106..6]
gi\|50800573 - gi\|50800573\|ref\|XP_424134.1\| PREDICTED: hypothetical protein [Gallus gallus]	98.0	[0..5]	[106..1]
gi\|68397381 - gi\|68397381\|ref\|XP_686604.1\| PREDICTED: similar to 60S acidic ribosomal protein P2 [Danio rerio]	98.0	[0..1]	[106..154]
gi\|110671420 - gi\|110671420\|gb\|ABG81961.1\| putative 60S acidic ribosomal protein P1 [Diaphorina citri]	97.0	[0..2]	[106..4]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTESALSYA ALILADSEIE ISSEKLLTLT NAANVPVENI WADIFAKALD GQNLKDLLVN  60
   61 FSAGAAAPAG VAGGVAGGEA GEAEAEKEEE EAKEESDDDM GFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.036212
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits