| Protein: | PRP11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 266 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP11.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-97 | [1..266] | [1..266] |
|
|
1.0E-86 | [1..257] | [1..214] |
|
|
2.0E-84 | [1..261] | [1..217] |
|
|
3.0E-84 | [1..260] | [1..215] |
|
|
3.0E-77 | [1..260] | [1..215] |
|
|
2.0E-69 | [8..262] | [6..216] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MNYLEGVGSK KGGGGIASES QFNLQRRKEV ESLLSKGENV PYTFQDEKDD QVRSNPYIYK 60
61 NHSGKLVCKL CNTMHMSWSS VERHLGGKKH GLNVLRRGIS IEKSSLGREG QTTHDFRQQQ 120
121 K
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.242 | d.110.4 | SNARE-like |
| View | Download | 0.290 | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.213 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.237 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| Term | Confidence | Notes |
| transcription regulator activity | 3.37529385176635 | bayes_pls_golite062009 |
| DNA binding | 3.3049326844117 | bayes_pls_golite062009 |
| nucleic acid binding | 3.24981360535232 | bayes_pls_golite062009 |
| snRNA binding | 3.16782731106334 | bayes_pls_golite062009 |
| RNA binding | 3.11293528368816 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.86343975521155 | bayes_pls_golite062009 |
| binding | 2.84954567129719 | bayes_pls_golite062009 |
| transcription factor activity | 2.44389510173662 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.57041104288348 | bayes_pls_golite062009 |
| mRNA binding | 1.28525296322454 | bayes_pls_golite062009 |
| transcription activator activity | 1.20323819132961 | bayes_pls_golite062009 |
| protein binding | 0.975412203442928 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.732558534458316 | bayes_pls_golite062009 |
| transcription repressor activity | 0.686318575498149 | bayes_pls_golite062009 |
| chromatin binding | 0.626365497850853 | bayes_pls_golite062009 |
| transcription factor binding | 0.515821187939278 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.200483461579207 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.113925660147477 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0855506955761403 | bayes_pls_golite062009 |
|
Region A: Residues: [122-266] |
1 11 21 31 41 51
| | | | | |
1 IIEAKQSLKN NGTIPVCKIA TVKNPKNGSV GLAIQVNYSS EVKENSVDSD DKAKVPPLIR 60
61 IVSGLELSDT KQKGKKFLVI AYEPFENIAI ELPPNEILFS ENNDMDNNND GVDELNKKCT 120
121 FWDAISKLYY VQFFFKQAEQ EQADV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.375 | 0.273 | U2 snRNP | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.476 | 0.066 | U2 snRNP | b.2.3 | Bacterial adhesins |
| View | Download | 0.342 | 0.019 | U2 snRNP | c.97.1 | Cytidine deaminase-like |
| View | Download | 0.458 | 0.013 | U2 snRNP | d.232.1 | Mago nashi protein |
| View | Download | 0.379 | 0.005 | U2 snRNP | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.476 | N/A | N/A | b.2.3 | Bacterial adhesins |
| View | Download | 0.458 | N/A | N/A | d.232.1 | Mago nashi protein |
| View | Download | 0.379 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.375 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.342 | N/A | N/A | c.97.1 | Cytidine deaminase-like |
| View | Download | 0.323 | N/A | N/A | d.113.1 | Nudix |
| View | Download | 0.304 | N/A | N/A | a.24.11 | Bacterial GAP domain |
| View | Download | 0.303 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.275 | N/A | N/A | d.189.1 | PX domain |
| View | Download | 0.274 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.263 | N/A | N/A | c.78.1 | Aspartate/ornithine carbamoyltransferase |
| View | Download | 0.262 | N/A | N/A | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.260 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.258 | N/A | N/A | d.104.1 | Class II aaRS and biotin synthetases |
| View | Download | 0.255 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.246 | N/A | N/A | d.153.1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
| View | Download | 0.235 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.227 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.222 | N/A | N/A | d.15.5 | Staphylokinase/streptokinase |
| View | Download | 0.220 | N/A | N/A | c.55.3 | Ribonuclease H-like |
| View | Download | 0.215 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.210 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
|
Region A: Residues: [225-266] |
1 11 21 31 41 51
| | | | | |
1 DMDNNNDGVD ELNKKCTFWD AISKLYYVQF FFKQAEQEQA DV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
