| Protein: | RDS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 832 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..832] | [1..832] |
|
|
0.0 | [3..657] | [27..644] |
|
|
0.0 | [3..657] | [27..644] |
|
|
2.0E-93 | [3..598] | [28..598] |
|
|
2.0E-81 | [3..517] | [58..539] |
|
|
4.0E-80 | [6..517] | [44..524] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MDSITVKKPR LRLVCLQCKK IKRKCDKLRP ACSRCQQNSL QCEYEERTDL SANVAANDSD 60
61 GFNSSHKLNF EQQPVLERTG LRYSLQVPEG VVNATLSIWN
|
| Detection Method: |  |
| Confidence: | 49.38764 |
| Match: | 1hwtD_ |
| Description: | Hap1 (Cyp1); HAP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.16002381293778 | bayes_pls_golite062009 |
| DNA binding | 3.92936270801133 | bayes_pls_golite062009 |
| nucleic acid binding | 3.76909067702445 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| transcription factor activity | 2.76608547022152 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.80020012839068 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.69026374220371 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.54700248976411 | bayes_pls_golite062009 |
| transcription activator activity | 0.778623988601299 | bayes_pls_golite062009 |
|
Region A: Residues: [101-514] |
1 11 21 31 41 51
| | | | | |
1 AEDMLVIVGL VTFLDYPFAA HSLAQHDQYI RALCASLYGM ALVDFSNYAN GIPCEDTSRS 60
61 ILGPLSFIEK AIFRRIEHSK QFRVQSAALG LLYNAFSMEE ENFSTLLPSL IAEVEDVLMQ 120
121 KKDCEILLRC FYQNIYPFYP FMDISLFESD LTSLLLQDDN NRWKISTEVK NVRKKIETLS 180
181 LLTIVMAMAL MHSKLDANLL SMVKENASES ARKLSLLCHK LLCLLDVFRY PNENTFTCLL 240
241 YFYVSEHLDP ESPDCVLSPT NLLTLHHLLN LSMTLGLQYE PSKYKRFKDP EVIRQRRILW 300
301 LGVQSLLFQI SLAEGDAGKS NSEYMEAYLT DFEEYIEASS EYEKSSASES NVQMNDIVWN 360
361 KYKFHVILSK LMSDCTSVIQ HPQLFHILGN IKRSEDFMAE NFPTSSIYQP LHEK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [515-832] |
1 11 21 31 41 51
| | | | | |
1 EPNAIKVGKS TVLDVMDIQK TEIFLTNIVG SMCFLNIFDV LSLHFEKKCV MHWEEYEKNY 60
61 HFLTLKSFNA YLKLAGLISD YLENKFQGNI LESRGYIIDK QICFMLVRIW MFQCRILLRF 120
121 SYKQESQKKL ASSSISTNDN EKEDEMIVIL ERLIKHIRNQ MAHLVDLAKG KLQDSYFGAY 180
181 QTVPMFRYVV YLIDVGGLVS VTNGFWDKIS SDGEIPPKVQ QAVRLKWGLD CNNSRRIKQK 240
241 LISSQSLQSF NQVLLCQMED AVLSSSFAIK ANTAMSQNTA EEFFNISEEE ALNQLLENNN 300
301 FDAFWDLLGE NLSDMPSL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
