| Protein: | TUP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 713 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TUP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [219..712] | [821..1253] |
|
|
0.0 | [197..712] | [946..1486] |
|
Region A: Residues: [1-281] |
1 11 21 31 41 51
| | | | | |
1 MTASVSNTQN KLNELLDAIR QEFLQVSQEA NTYRLQNQKD YDFKMNQQLA EMQQIRNTVY 60
61 ELELTHRKMK DAYEEEIKHL KLGLEQRDHQ IASLTVQQQR QQQQQQQVQQ HLQQQQQQLA 120
121 AASASVPVAQ QPPATTSATA TPAANTTTGS PSAFPVQASR PNLVGSQLPT TTLPVVSSNA 180
181 QQQLPQQQLQ QQQLQQQQPP PQVSVAPLSN TAINGSPTSK ETTTLPSVKA PESTLKETEP 240
241 ENNNTSKIND TGSATTATTT TATETEIKPK EEDATPASLH Q
|
| Detection Method: |  |
| Confidence: | 14.54 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [282-713] |
1 11 21 31 41 51
| | | | | |
1 DHYLVPYNQR ANHSKPIPPF LLDLDSQSVP DALKKQTNDY YILYNPALPR EIDVELHKSL 60
61 DHTSVVCCVK FSNDGEYLAT GCNKTTQVYR VSDGSLVARL SDDSAANNHR NSITENNTTT 120
121 STDNNTMTTT TTTTITTTAM TSAAELAKDV ENLNTSSSPS SDLYIRSVCF SPDGKFLATG 180
181 AEDRLIRIWD IENRKIVMIL QGHEQDIYSL DYFPSGDKLV SGSGDRTVRI WDLRTGQCSL 240
241 TLSIEDGVTT VAVSPGDGKY IAAGSLDRAV RVWDSETGFL VERLDSENES GTGHKDSVYS 300
301 VVFTRDGQSV VSGSLDRSVK LWNLQNANNK SDSKTPNSGT CEVTYIGHKD FVLSVATTQN 360
361 DEYILSGSKD RGVLFWDKKS GNPLLMLQGH RNSVISVAVA NGSPLGPEYN VFATGSGDCK 420
421 ARIWKYKKIA PN
|
| Detection Method: | |
| Confidence: | 10079.69897 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [211-281] |
1 11 21 31 41 51
| | | | | |
1 TAINGSPTSK ETTTLPSVKA PESTLKETEP ENNNTSKIND TGSATTATTT TATETEIKPK 60
61 EEDATPASLH Q
|
| Detection Method: | |
| Confidence: | 71.69897 |
| Match: | 1p22A |
| Description: | F-box/WD-repeat protein 1 (beta-TRCP1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [282-713] |
1 11 21 31 41 51
| | | | | |
1 DHYLVPYNQR ANHSKPIPPF LLDLDSQSVP DALKKQTNDY YILYNPALPR EIDVELHKSL 60
61 DHTSVVCCVK FSNDGEYLAT GCNKTTQVYR VSDGSLVARL SDDSAANNHR NSITENNTTT 120
121 STDNNTMTTT TTTTITTTAM TSAAELAKDV ENLNTSSSPS SDLYIRSVCF SPDGKFLATG 180
181 AEDRLIRIWD IENRKIVMIL QGHEQDIYSL DYFPSGDKLV SGSGDRTVRI WDLRTGQCSL 240
241 TLSIEDGVTT VAVSPGDGKY IAAGSLDRAV RVWDSETGFL VERLDSENES GTGHKDSVYS 300
301 VVFTRDGQSV VSGSLDRSVK LWNLQNANNK SDSKTPNSGT CEVTYIGHKD FVLSVATTQN 360
361 DEYILSGSKD RGVLFWDKKS GNPLLMLQGH RNSVISVAVA NGSPLGPEYN VFATGSGDCK 420
421 ARIWKYKKIA PN
|
| Detection Method: | |
| Confidence: | 86.39794 |
| Match: | 1erjA |
| Description: | Tup1, C-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 6.67009948605948 | bayes_pls_golite062009 | |
| acetyltransferase activity | 3.85374902981345 | bayes_pls_golite062009 |
| RNA binding | 3.77273677738815 | bayes_pls_golite062009 |
| acyltransferase activity | 3.35098520158193 | bayes_pls_golite062009 |
| actin binding | 3.31804728298431 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 3.31615347567536 | bayes_pls_golite062009 |
| GTPase activity | 3.23750443966606 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups | 3.14917998298348 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 3.00422709839505 | bayes_pls_golite062009 |
| tubulin binding | 2.76945430061825 | bayes_pls_golite062009 |
| microtubule binding | 2.72684103222924 | bayes_pls_golite062009 |
| structural molecule activity | 2.6914565031145 | bayes_pls_golite062009 |
| dynein binding | 2.54821997913979 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| transcription repressor activity | 2.29049708962212 | bayes_pls_golite062009 |
| snoRNA binding | 2.27164613239345 | bayes_pls_golite062009 |
| nucleic acid binding | 2.00420268007946 | bayes_pls_golite062009 |
| dynactin binding | 1.92897254169098 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| actin filament binding | 1.5197243426595 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.41752877005447 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| receptor activity | 1.12819778129653 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| mRNA binding | 1.05053985350578 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.01166033978052 | bayes_pls_golite062009 |
| molecular transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| signal transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| type 1 angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| histone binding | 0.685319917508843 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| dynein intermediate chain binding | 0.443846546939402 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.426429095658617 | bayes_pls_golite062009 |
| kinase activity | 0.387572734234845 | bayes_pls_golite062009 |
| transcription initiation factor activity | 0.319410949467982 | bayes_pls_golite062009 |
| receptor binding | 0.316169754698691 | bayes_pls_golite062009 |
| histone methyltransferase activity | 0.311523647180993 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.28606552120995 | bayes_pls_golite062009 |
| G-protein-coupled receptor binding | 0.251120087240234 | bayes_pls_golite062009 |
| protein kinase activity | 0.229242350006544 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226335610368636 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
