| Protein: | SYP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 870 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..870] | [1..870] |
|
|
4.0E-86 | [207..870] | [5..668] |
|
|
4.0E-50 | [5..799] | [6..742] |
|
|
1.0E-49 | [66..659] | [761..1367] |
|
|
1.0E-45 | [157..722] | [471..1029] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MTEQRTKYAD SILTTKSPYE ATETIRIRLS QVKLLNKDFY LLFKELANLK RNYAQQLRKI 60
61 IAENEDITKI LNAQMIESNV LTPQEMSAFR FNSLGELRNV WDTVIEELKS DLKSSTEYYN 120
121 TLDQQVVREL KESVENNTSW RESKDLHSKL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [151-377] |
1 11 21 31 41 51
| | | | | |
1 SKNAASIEHY SKNNENSSHL EEARRQWDQQ SPYLFELFET IDYNRLDTLK NCMLRFQTSF 60
61 SDYLLNTTKE CETVMTKFLA FEPQSEIDRF AKDASQYNFQ LSSSSKEVVP NNASPASATG 120
121 ARPVSVSNGA ANTEREKKSP QKDKRKSAFG NIGHRLASAS SSLTHNDLMN NEFSDSTNNS 180
181 SLKSKKSSHT LRSKVGSIFG RNKTKNKRQQ QSSSNSHIQA SITETPN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [378-604] |
1 11 21 31 41 51
| | | | | |
1 NSSTRVSSTA TSSIYQKQRR PTYSSSKSNN WTPGEASDTP PLPPHATPKN VDAPVTADTP 60
61 PAQTFTPSEV PPSTPQQSSP PTAKEPDSSN LPKTVPISIS QPPLQPQSKT KPLPVEPASP 120
121 SISLPTATVD NQPSGQVDSR PLHIRAPALP PSRKQNFIHN RDSQLYDSLP NHGSGATPTS 180
181 SSLSSIPQER PVSTLSSQIT GELRELNPQA TGSSTSLVGQ SLFQHSS
|
| Detection Method: | |
| Confidence: | 11.75 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [605-730] |
1 11 21 31 41 51
| | | | | |
1 LDTSQFGLNA SIAEVLNASF KDGMLQNSQL IGEIALNYLP NSVMNSPLPI GINLRINNGA 60
61 KFEKVILNQA FIERVAPEEF KVNPSFIDSR TLGAIKYSIK EPIAPIVIHP VWRFESHQAS 120
121 VVLTVK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [731-870] |
1 11 21 31 41 51
| | | | | |
1 MSPSLPDEIS QIVIEDLVVF VNIDGANATS ALSKPQGSFS KEKKRITWRF KEPVVLTRNG 60
61 EGQRLIARFI TDGLAHESAK GVITKFTISE TDNVALPHSG AGSGITLTCQ ELDENNPFGG 120
121 EWLDVNTKRT LTTGNYHGLA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
