| Protein: | SYP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 870 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYP1.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..870] | [1..870] |
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|
4.0E-86 | [207..870] | [5..668] |
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4.0E-50 | [5..799] | [6..742] |
|
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1.0E-49 | [66..659] | [761..1367] |
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1.0E-45 | [157..722] | [471..1029] |
|
Region A: Residues: [1-150] |
1 11 21 31 41 51
| | | | | |
1 MTEQRTKYAD SILTTKSPYE ATETIRIRLS QVKLLNKDFY LLFKELANLK RNYAQQLRKI 60
61 IAENEDITKI LNAQMIESNV LTPQEMSAFR FNSLGELRNV WDTVIEELKS DLKSSTEYYN 120
121 TLDQQVVREL KESVENNTSW RESKDLHSKL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.716 | 0.517 | cellular bud tip | a.1.1 | Globin-like |
| View | Download | 0.666 | 0.062 | cellular bud tip | a.118.9 | ENTH/VHS domain |
| View | Download | 0.548 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.530 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.492 | N/A | N/A | a.7.4 | Smac/diablo |
| View | Download | 0.487 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.449 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.447 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.440 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.436 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.435 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.429 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.421 | N/A | N/A | a.7.4 | Smac/diablo |
| View | Download | 0.399 | N/A | N/A | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.392 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.364 | N/A | N/A | a.2.5 | Prefoldin |
| View | Download | 0.361 | N/A | N/A | a.118.16 | Testis/brain RNA-binding protein (TB-RBP) |
| View | Download | 0.350 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.338 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.332 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.329 | N/A | N/A | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.320 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.317 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.301 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.298 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.293 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.274 | N/A | N/A | a.149.1 | RNase III endonuclease catalytic domain |
| View | Download | 0.273 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.267 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.256 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.255 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.251 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.247 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.246 | N/A | N/A | a.118.16 | Testis/brain RNA-binding protein (TB-RBP) |
| View | Download | 0.235 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.234 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.229 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.228 | N/A | N/A | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.224 | N/A | N/A | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.222 | N/A | N/A | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.220 | N/A | N/A | a.118.16 | Testis/brain RNA-binding protein (TB-RBP) |
| View | Download | 0.220 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.216 | N/A | N/A | a.182.1 | GatB/YqeY domain |
| View | Download | 0.216 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.215 | N/A | N/A | a.175.1 | Orange carotenoid protein, N-terminal domain |
| View | Download | 0.214 | N/A | N/A | f.1.1 | Colicin |
| View | Download | 0.211 | N/A | N/A | a.172.1 | Helical scaffold and wing domains of SecA |
| View | Download | 0.208 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.206 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.204 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.203 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.202 | N/A | N/A | d.173.1 | Methionine synthase activation domain-like |
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Region A: Residues: [151-377] |
1 11 21 31 41 51
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1 SKNAASIEHY SKNNENSSHL EEARRQWDQQ SPYLFELFET IDYNRLDTLK NCMLRFQTSF 60
61 SDYLLNTTKE CETVMTKFLA FEPQSEIDRF AKDASQYNFQ LSSSSKEVVP NNASPASATG 120
121 ARPVSVSNGA ANTEREKKSP QKDKRKSAFG NIGHRLASAS SSLTHNDLMN NEFSDSTNNS 180
181 SLKSKKSSHT LRSKVGSIFG RNKTKNKRQQ QSSSNSHIQA SITETPN
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
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Region A: Residues: [378-604] |
1 11 21 31 41 51
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1 NSSTRVSSTA TSSIYQKQRR PTYSSSKSNN WTPGEASDTP PLPPHATPKN VDAPVTADTP 60
61 PAQTFTPSEV PPSTPQQSSP PTAKEPDSSN LPKTVPISIS QPPLQPQSKT KPLPVEPASP 120
121 SISLPTATVD NQPSGQVDSR PLHIRAPALP PSRKQNFIHN RDSQLYDSLP NHGSGATPTS 180
181 SSLSSIPQER PVSTLSSQIT GELRELNPQA TGSSTSLVGQ SLFQHSS
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| Detection Method: | |
| Confidence: | 11.75 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [605-730] |
1 11 21 31 41 51
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1 LDTSQFGLNA SIAEVLNASF KDGMLQNSQL IGEIALNYLP NSVMNSPLPI GINLRINNGA 60
61 KFEKVILNQA FIERVAPEEF KVNPSFIDSR TLGAIKYSIK EPIAPIVIHP VWRFESHQAS 120
121 VVLTVK
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.436 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.440 | a.118.8 | TPR-like |
| View | Download | 0.610 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.487 | a.29.2 | Bromodomain |
| View | Download | 0.610 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.487 | a.29.2 | Bromodomain |
| View | Download | 0.440 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.440 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.440 | a.118.8 | TPR-like |
| View | Download | 0.436 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.435 | d.110.4 | SNARE-like |
| View | Download | 0.429 | a.4.12 | TrpR-like |
| View | Download | 0.422 | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.418 | a.118.8 | TPR-like |
| View | Download | 0.411 | d.79.1 | YjgF-like |
| View | Download | 0.408 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.390 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.380 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.378 | a.23.3 | Methane monooxygenase hydrolase, gamma subunit |
| View | Download | 0.333 | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.322 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.319 | d.58.34 | Formiminotransferase domain of formiminotransferase-cyclodeaminase. |
| View | Download | 0.314 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.291 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.287 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.281 | c.116.1 | alpha/beta knot |
| View | Download | 0.281 | a.24.3 | Cytochromes |
| View | Download | 0.268 | a.39.1 | EF-hand |
| View | Download | 0.267 | a.96.1 | DNA-glycosylase |
| View | Download | 0.266 | d.112.1 | Phoshotransferase/anion transport protein |
| View | Download | 0.259 | d.66.1 | Alpha-L RNA-binding motif |
| View | Download | 0.256 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.255 | a.39.1 | EF-hand |
| View | Download | 0.254 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.253 | d.58.34 | Formiminotransferase domain of formiminotransferase-cyclodeaminase. |
| View | Download | 0.250 | c.47.1 | Thioredoxin-like |
| View | Download | 0.248 | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| View | Download | 0.235 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.231 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.231 | d.168.1 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| View | Download | 0.218 | d.79.4 | Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain |
| View | Download | 0.211 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.210 | c.23.5 | Flavoproteins |
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Region A: Residues: [731-870] |
1 11 21 31 41 51
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1 MSPSLPDEIS QIVIEDLVVF VNIDGANATS ALSKPQGSFS KEKKRITWRF KEPVVLTRNG 60
61 EGQRLIARFI TDGLAHESAK GVITKFTISE TDNVALPHSG AGSGITLTCQ ELDENNPFGG 120
121 EWLDVNTKRT LTTGNYHGLA
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.752 | 0.399 | cellular bud tip | b.60.1 | Lipocalins |
| View | Download | 0.573 | 0.055 | cellular bud tip | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.534 | 0.015 | cellular bud tip | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.752 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.573 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.562 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.554 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.534 | N/A | N/A | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.462 | N/A | N/A | b.76.2 | Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |
| View | Download | 0.453 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.439 | N/A | N/A | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.370 | N/A | N/A | d.32.1 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |
| View | Download | 0.354 | N/A | N/A | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.329 | N/A | N/A | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.316 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.308 | N/A | N/A | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.300 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.296 | N/A | N/A | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.283 | N/A | N/A | c.55.3 | Ribonuclease H-like |
| View | Download | 0.250 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.249 | N/A | N/A | d.157.1 | Metallo-hydrolase/oxidoreductase |
| View | Download | 0.248 | N/A | N/A | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.232 | N/A | N/A | d.168.1 | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain |
| View | Download | 0.211 | N/A | N/A | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.207 | N/A | N/A | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
